Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1413 ATGATGGAGAAGAGAGTGTCTGACATTTACAGGTTGGATGACCTGGACTCTAGGCTCTCTTCATCTTCTGATACTCGAATTAAGAAAAGTGGATTTAGTGTTGAGAAATTAAACCATGGTAGCCATGCAAGCACTGCGACCTCTAGGTCTTTCAAAAAAGGAATGATAAAAGGATCTGAAGGACTGAAGTCAATTGGACGATCACTTGGATTCGGGGTATCTAAGGCAGTATTCCCTGAAGATCTGAAAGTGTCCGAGAACATATTTGATCCTCAAGACAAATTTTTGCTCCTACTGAATAAACTTTTTGTTGTCTCAGGCATTTTAGCTGTGTTTCTGGATCCATTATTTTTCTACCTCCCTCTCATCAATGATCCATCCAACTGTCTCGGCATAGATCGGAAAATGGCAATCATTGTCACCACCTTGAGGACGGCTGTTGATGTTTTCTATCTTATACACATGGCTCTTCAATTCTGCACTGCCTATATTGCCCCATCTTCTCGTGTCTTTGGACGGGGGGAGCTTGTAATAGATTCAACTCAGATAGCCAAGCGATACTTGCGGCAGTATTTCGTTGTTGACTTTCTATCTGTGCTGCCCTTACCACAGATTGTGGTTTGGAGATTTCTTCAAAGATCAAAAGGTTCAGATGTATTAGCAACAAGGCAGGCCTTGATGTATATTATCTTCCTACAGTATGTTCCTAGGCTTCTCCGGATGGTACCACTGACTTCAGAACTTAAGAGAACCGCTGGTGTCTTTGCTGAAACCGCATGGGCAGGTGCTGCAACTTATTTGATGTTATACATGCTTGCCAGTCATATAGTTGGGGCTTTTTGGTACTTGTTTGCTCTTGAACGCATTGACGCATGCTGGCAGGAGGCATGCATGCAACCAGGGTGCAAAAAGGATTTCTTGTATTGTGGTAACCAGTTGATGGAAGGTTATAATGACTGGAACAGTACAATTCTTAACGAACATTGCTCTGCAGATGACAATTCACCTTTTGATTTTGGAATTTTTAAACTCGGATTGTCAGATGGCATTTTTTCAACTGAAAAATTTGTGACCAAATACTGTTTCTGTTTATGGTGGGGGCTCCAGAATTTGAGCACTCTTGGCCAGGGACTTGTAGCCAGCACTTATTCTTGGGAAACCATCTTTTCAATAGCACTATGCACATCTGGTCTTATCCTCTTTGCACTTCTACTTGGTAACATGCAGACCTATCTTCAGTCTATTGCCATCAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCCGAACATTGGATGCATCATCGTTTGCTCCCACCAGATCTTAGAGAGCGGGTGAGACGCTATGATCAATATAAGTGGTTAGCGACACGGGGTGTGGATGAAGAAAGTTTGGTTCAGACACTTCCAAAGGATCTTAGAAGAGATATCAAGCGTCACCTCTGTCTGGCTTTAGTGACAAGGGTTCCATTGTTTGAGAGCATGGATGAGAGGCTGCTTGATGCCATTTGTGAAAGACTGAAACCTTGTTTATTTACTGAGAATACTTACATTGTACGGGAAGGAGATCCAGTTGATGAGATGATTTTCATCATTCGTGGTCGACTTGAAAGTGTTACCACAGATGGTGGTAGAAGTGGATTTTTTAACCGTGGTTTCCTTAAAGAGACTGACTTCTGCGGGGAGGAGCTTCTAACCTGGGCACTTGATCCAAGATCCAGTTCTAACCTCCCAACTTCTACTCGTACGGTTAAGGCATTAACTGAGGTTGAGTGTTTCGCCTTAATCGCGGACGAGCTAAAATTTGTTGCTAGTCAGTTTAGGCGCCTTCATAGTAGACAGGTTCAACACACATTCCGGTTCTACTCACAGCAATGGAGGACTTGGGCTGCCTGCTTTATCCAAGCAGCATGGCGGCGATATTGTAAGAGGAAGGGCATGGAGCTTCGTCGTAAGGAAGAGCCTGAGGAGTCAGAAGGATCGCACAGTAATGCTAGTGGTGGTTCATATAGCATTGGTGCTACCTTCTTAGCTTCAAGGTTTGCTGCCAATGCTCTTCGGGGCATACATCGCAACCCGACTGCTAAGACTGCGAGGGAGTTGGTGAAACTACAGAAACCTCCAGAACCTGACTTTAGTGCTGATGCAGATTAA 2154 0.4387 MMEKRVSDIYRLDDLDSRLSSSSDTRIKKSGFSVEKLNHGSHASTATSRSFKKGMIKGSEGLKSIGRSLGFGVSKAVFPEDLKVSENIFDPQDKFLLLLNKLFVVSGILAVFLDPLFFYLPLINDPSNCLGIDRKMAIIVTTLRTAVDVFYLIHMALQFCTAYIAPSSRVFGRGELVIDSTQIAKRYLRQYFVVDFLSVLPLPQIVVWRFLQRSKGSDVLATRQALMYIIFLQYVPRLLRMVPLTSELKRTAGVFAETAWAGAATYLMLYMLASHIVGAFWYLFALERIDACWQEACMQPGCKKDFLYCGNQLMEGYNDWNSTILNEHCSADDNSPFDFGIFKLGLSDGIFSTEKFVTKYCFCLWWGLQNLSTLGQGLVASTYSWETIFSIALCTSGLILFALLLGNMQTYLQSIAIRLEEMRVKRRDSEHWMHHRLLPPDLRERVRRYDQYKWLATRGVDEESLVQTLPKDLRRDIKRHLCLALVTRVPLFESMDERLLDAICERLKPCLFTENTYIVREGDPVDEMIFIIRGRLESVTTDGGRSGFFNRGFLKETDFCGEELLTWALDPRSSSNLPTSTRTVKALTEVECFALIADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYCKRKGMELRRKEEPEESEGSHSNASGGSYSIGATFLASRFAANALRGIHRNPTAKTARELVKLQKPPEPDFSADAD 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1413 717 PRINTS EAG/ELK/ERG potassium channel family signature 454 461 IPR003938 GO:0005249|GO:0006813|GO:0016020
Acco04g1413 717 PRINTS EAG/ELK/ERG potassium channel family signature 404 413 IPR003938 GO:0005249|GO:0006813|GO:0016020
Acco04g1413 717 PRINTS EAG/ELK/ERG potassium channel family signature 155 164 IPR003938 GO:0005249|GO:0006813|GO:0016020
Acco04g1413 717 PRINTS EAG/ELK/ERG potassium channel family signature 386 397 IPR003938 GO:0005249|GO:0006813|GO:0016020
Acco04g1413 717 PRINTS EAG/ELK/ERG potassium channel family signature 272 282 IPR003938 GO:0005249|GO:0006813|GO:0016020
Acco04g1413 717 PRINTS EAG/ELK/ERG potassium channel family signature 360 377 IPR003938 GO:0005249|GO:0006813|GO:0016020
Acco04g1413 717 ProSiteProfiles cAMP/cGMP binding motif profile. 491 575 IPR000595 -
Acco04g1413 717 Gene3D Helix hairpin bin 419 482 - -
Acco04g1413 717 Pfam Ion transport protein 102 416 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Acco04g1413 717 Pfam Cyclic nucleotide-binding domain 512 601 IPR000595 -
Acco04g1413 717 CDD CAP_ED 491 622 IPR000595 -
Acco04g1413 717 SUPERFAMILY Voltage-gated potassium channels 91 413 - -
Acco04g1413 717 MobiDBLite consensus disorder prediction 697 717 - -
Acco04g1413 717 SMART cnmp_10 491 622 IPR000595 -
Acco04g1413 717 SUPERFAMILY cAMP-binding domain-like 420 610 IPR018490 -
Acco04g1413 717 Gene3D - 108 416 - -
Acco04g1413 717 Gene3D Jelly Rolls 489 609 IPR014710 -
Acco04g1413 717 ProSiteProfiles IQ motif profile. 627 656 IPR000048 GO:0005515
Acco04g1413 717 FunFam Cyclic nucleotide-gated ion channel 1 489 607 - -
Acco04g1413 717 FunFam Cyclic nucleotide-gated ion channel 1 418 482 - -
Acco04g1413 717 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 82 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1413 Acco-ChrAcco04 15851379 15858126 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1413 18 715 Ion Channels AT5G57940 75.496 0.0 1081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g1413 04 15851379 15858126 Acco04g1413 04 15851379 15858126 ECH