Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1410 ATGAAGGAGAGGAGAATGTCTAACATTTACAGGTTGGATGACCTGGACTCTAGGCTCTCTTCATCTTCTGATACTCGAATTAAGAAAAGTGGATTTACTGTTGACAAATTAAACCATGGTAGCCATGCAAGCACTGCAACCTCTAGGTCTTTCAAAAGAGAAATGATAAAAGGATCTGAAGGACTGAAGTCAATTGGACGATCACTTGGATTCGGGGTATCTAAGGCAGTATTCCCTGAAGATCTGAAAGTGTCTGAGAAGAAGATATTTGATCCTCAAGACAAATTTTTGCTCCTATTGAATAAACTTTTTGTTGTCTCATGCATTTTGGCTTTGGCTTTGGAACCATTATTTTTCTACCTCCCTTTCATCAATGATCTATCCAACTGCCTTGATATAGATCGGAAAATGGCAATCATTGTCGCCACCTTGAGGACGGCAGTTGATGTTTTTTATCTTATACACATGGCTCTTCAATTCCGCACTGCCTATATTGCCCCATCATCTCGTGTCTTTGGACGGGGGGAGCTTGTAATAGATTCAACACAGATAGCCAAGCGATACTTGCGGCGGTTTTTCATTGTTGACTTTCTATCTGTGCTTCCCTTACCACAGATTGTGGTTTGGAGATTTATTCAAAGATCAAAAGGTTCCGATGTATTGGCAACAAAGCAGGCCTTGGTGTACATTATCTTACTACAGTATGTTCCTAGGCTTCTCCGGATGTTACCACTGACTTCTGAACTTAAGAGAACCGCTGGTGTCTTCGCTGAAACTGCATGGGCAGGTGCTGCAAATTATTTGATATTATACATGCTTGCCTGTCATACAGTTGGGGCTTTTTGGTACTTGTTTGCCATTGAACGCAATGACACATGCTGGCAGGAGGCATGCACGCAACCAGGGTGCAAAAAGGATTTCTTGTATTGTGGTAACCAGTTGATGGAAGGTTATAACAACTGGAATAGTACAATTCTTAATGAACAGTGCTCTACCGACAACAATTCACCTTTTAATTTTGGAATTTTTAGCCAAGCATTGTCATCTGGCATTGTTTCATCTAAAAATTTTGTGTCCAAATATTGTTACTGTTTTTGGTGGGGGCTCCAGAATTTGAGCACTCTTGGCCAGGGATTTCAAACCAGCGCTTATCCTTGGGAAAACATCTTTTCAATAGCACTAAACGCATTTGCTCTTATCCTCTTTGCACTTCTAATCGGTAACATGCAGACCTATCTTCAGTCTATTACCATAAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCCGAACATTGGATGCATCATCGTTTGCTCTCACCAGATCTGAGAGGGCGGGTGAGACGCTATGATCAATATAAGTGGTTAGCAACACGTGGTGTGGATGAAGAAAGTTTGGTTCAGACACTTCCAAAGGATCTTAGAAGAGATATCAAGCGTCACCTCTGTCTGGCTTTAGTGACAAAGGTTCCATTGTTTGAGAGCATGGATGAGAGGCTGCTTGATGCCATTTGTGAAAGACTGAAACCTTGTTTATTTACTGAGAATACTTACATTGTACGGGAAGGAGATCCAGTTGAAGAGATGATTTTCATCATTCGTGGTCGACTCGAAAGTGTTACCACAGATGGTGGTAGAAGTGGATTTTTTAACCGTGGTTTCCTTAAAGAGACTGACTTCTGCGGGGAGGAGCTTCTAACCTGGGCACTTGATCCAAGATCCAGTTCTAACCTCCCAACTTCTACTCGTACGGTGAGGGCATTAACTGAGGTTGAGTGTTTCGCCTTAATCGCCGATGAGCTAAAATTTGTTGCTAGTCAGTTTAGGCGCCTTCATAGTAGACAGGTTCAACACACATTCCGGTTCTACTCTCAGCAATGGAGAACTTGGGCTGCCTGCTTTATCCAAGCAGCATGGCGTCGATATTCTAAGAGGAAGGGCATGGAGCTTCATCGGAAGGAAGAGCTCGAGGAGTCAGAAGGATCTCACAGTAATGCTAGTGGTGGTTCATACAGCATTGGTGCTACCTTCTTAGCTTCAAGGTTTGCTGCCAATGCTCTTCGGGGCATACGTCGCAAAGGGAACGCTAAGACTGCGAGGGAGTTGGTGAAACTACAGAAACCTCCAGAACCTGACTTTAGTGCTGATGCAGATTAA 2157 0.4307 MKERRMSNIYRLDDLDSRLSSSSDTRIKKSGFTVDKLNHGSHASTATSRSFKREMIKGSEGLKSIGRSLGFGVSKAVFPEDLKVSEKKIFDPQDKFLLLLNKLFVVSCILALALEPLFFYLPFINDLSNCLDIDRKMAIIVATLRTAVDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDSTQIAKRYLRRFFIVDFLSVLPLPQIVVWRFIQRSKGSDVLATKQALVYIILLQYVPRLLRMLPLTSELKRTAGVFAETAWAGAANYLILYMLACHTVGAFWYLFAIERNDTCWQEACTQPGCKKDFLYCGNQLMEGYNNWNSTILNEQCSTDNNSPFNFGIFSQALSSGIVSSKNFVSKYCYCFWWGLQNLSTLGQGFQTSAYPWENIFSIALNAFALILFALLIGNMQTYLQSITIRLEEMRVKRRDSEHWMHHRLLSPDLRGRVRRYDQYKWLATRGVDEESLVQTLPKDLRRDIKRHLCLALVTKVPLFESMDERLLDAICERLKPCLFTENTYIVREGDPVEEMIFIIRGRLESVTTDGGRSGFFNRGFLKETDFCGEELLTWALDPRSSSNLPTSTRTVRALTEVECFALIADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKGMELHRKEELEESEGSHSNASGGSYSIGATFLASRFAANALRGIRRKGNAKTARELVKLQKPPEPDFSADAD 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1410 718 CDD CAP_ED 492 623 IPR000595 -
Acco04g1410 718 SUPERFAMILY Voltage-gated potassium channels 92 414 - -
Acco04g1410 718 SMART cnmp_10 492 623 IPR000595 -
Acco04g1410 718 Pfam Cyclic nucleotide-binding domain 513 602 IPR000595 -
Acco04g1410 718 ProSiteProfiles cAMP/cGMP binding motif profile. 492 576 IPR000595 -
Acco04g1410 718 SUPERFAMILY cAMP-binding domain-like 421 611 IPR018490 -
Acco04g1410 718 PRINTS EAG/ELK/ERG potassium channel family signature 361 378 IPR003938 GO:0005249|GO:0006813|GO:0016020
Acco04g1410 718 PRINTS EAG/ELK/ERG potassium channel family signature 455 462 IPR003938 GO:0005249|GO:0006813|GO:0016020
Acco04g1410 718 PRINTS EAG/ELK/ERG potassium channel family signature 273 283 IPR003938 GO:0005249|GO:0006813|GO:0016020
Acco04g1410 718 PRINTS EAG/ELK/ERG potassium channel family signature 156 165 IPR003938 GO:0005249|GO:0006813|GO:0016020
Acco04g1410 718 PRINTS EAG/ELK/ERG potassium channel family signature 387 398 IPR003938 GO:0005249|GO:0006813|GO:0016020
Acco04g1410 718 PRINTS EAG/ELK/ERG potassium channel family signature 405 414 IPR003938 GO:0005249|GO:0006813|GO:0016020
Acco04g1410 718 FunFam Cyclic nucleotide-gated ion channel 1 419 483 - -
Acco04g1410 718 Gene3D Helix hairpin bin 420 483 - -
Acco04g1410 718 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 81 713 - -
Acco04g1410 718 MobiDBLite consensus disorder prediction 699 718 - -
Acco04g1410 718 FunFam Cyclic nucleotide-gated ion channel 1 490 608 - -
Acco04g1410 718 Pfam Ion transport protein 100 418 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Acco04g1410 718 Gene3D Jelly Rolls 490 610 IPR014710 -
Acco04g1410 718 Gene3D - 102 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1410 Acco-ChrAcco04 15783455 15790120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1410 18 716 Ion Channels AT5G57940 75.071 0.0 1078