Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1388 ATGGAAGCCAGCGCTGGACTTGTCGCTGGGTCTCACAACCGCAACGAGCTTGTCGTCATCCACGGCCACGAAGAGCATAAGCCTTTGAAGAATTTGGATGGCCAAGTCTGTGAGATATGCGGTGACGACGTTGGACTCACCGTGGACGGCGACCTGTTTGTCGCCTGCAATGAGTGTGGTTTCCCGCTTTGCCGTCCCTGCTATGAATATGAGCGAAGAGAAGGCAGCCAACTCTGCCCTCAGTGCAAGACCAGATACAAGCGTCTCAAAGGAAGCCCTAGGGTGGAGGGAGACGAAGATGAGGAGGACGTGGATGACATTGAACATGAATTCAAGATCGCAGCAGACGAGAAGAACAAGCACAACCATATGGCAGAGGCCATGCTGCATGGCAAGATGAGCTATGGAAGAGGTCCTGAGGATGATGACAGTAGTGCTCAATTCCCACCGGTCATCGCCGGAAACCGCTCCCGTCCGGTGAGTGGAGAGTTCTCAATATCATCTCATGGTTATGGAGACCAGATGCTTTCCTCTTCTCTCCACAAACGCATTCATCCTTATCCAGTTTCTGAACCTGGAAGTGCAAGAGGAGAGGAGAAGAACGAGGATGGCTGGAAAGATAGAATGGACGACTGGAAACTCCAGCAAGGAAACTTGGGGCCTGAACCTGATGAAGATCCTGATGCAGCCTTGCTAGATGAAGCGAGGCAGCCACTGTCAAGAAAAGTACCAATAGCGTCAAGCAAGGTAAATCCGTACAGAATGGTGATAGTGGCACGTCTGGTAATTCTGGCCTTCTTCCTCCGATACAGAATTATGAACCCGGTTCATGACGCCATAGGCCTCTGGCTCACCTCCATTATCTGCGAAATCTGGTTTGCTTTCTCATGGATCCTCGATCAGTTTCCCAAATGGTTCCCGATCGAACGCGAGACCTACCTCGATCGTCTCTCCGTCAGGTATGAGAGGGAAGGGGAGCCGAACATGCTGGCACCGGTGGATGTGTTTGTGAGTACGGTGGATCCGATGAAGGAACCACCGTTGGTGACGGCGAACACGATTCTGTCGATATTGGCGATGGATTATCCGGTGGATAAGATATCGTGTTATATATCGGACGATGGAGCTTCCATGTGTACGTTCGAAGCGCTATCGGAAACGGCGGAGTTTGCGAGGAAGTGGGTCCCGTTTTGTAAGAAGTTCGCGATTGAGCCAAGAGCTCCTGAGATGTACTTCTGTGAGAAGATTGATTACTTGAAAGACAAGGTTCAGCCCACTTTCGTCAAGGAGCGTCGAGCTATGAAGAGAGAATACGAAGAGTTCAAGGTCAGAGTGAACGCACTTGTGGCGAAAGCCCAGAAAGTTCCAGCGGGAGGATGGATTATGCAGGATGGGACTCCATGGCCTGGCAACAACACGAAGGACCATCCCGGTATGATCCAAGTGTTTCTCGGCCACAGCGGCGGCTGCGACACCGACGGCAACCTTCTTCCTCGTCTAGTTTATGTGTCCAGAGAGAAAAGGCCTGGTTTTGCTCACCACAAGAAAGCTGGTGCCATGAATGCTCTGGTTCGGGTCTCTGCTGTGCTCACAAATGCCCCTTTCATGCTCAACTTGGATTGTGATCACTATGTCAATAACAGTAAGGCTGTCAGAGAGGCCATGTGCTTCATGATGGATCCCCAAACTGGAAAGAAAGTCTGCTATGTCCAATTCCCTCAAAGATTTGATGGCATTGATAGGCACGATCGTTATGCCAACAGGAACACTGTCTTCTTTGATATTAACATGAAGGGTCTAGATGGTATTCAGGGTCCTGTGTATGTGGGGACAGGATGTGTGTTCAGGAGGCAAGCTTTATACGGATACAATCCTCCAAAGGGTCCTAAACGCCCCAAGATGGTAAGTTGTGATTGCTGCCCATGTTTTGGACGCCGCAGGAAGCAAAAGTATGCAAAGGATGGCGCAAATGCTGAGTCTGCAATGCTACAACAAGGAATGGAAGATGATAAAGAGTTGCTCATGTCTCAGATGAATTTTGAAAAGAAATTTGGGCAATCATCTATTTTTGTCACTTCAACTTTGATGGAAGAAGGTGGTGTGCCTCCTTCCTCAAGCCCAGCAGCTCTGCTCAAAGAAGCAATTCATGTCATAAGCTGTGGCTATGAGGATAAAACCGAATGGGGAACTGAGCTGGGTTGGATCTATGGATCTATTACTGAGGATATCCTAACAGGTTTCAAGATGCATTGCCGTGGTTGGAGGTCAATTTACTGCAACCCAAAGAGGCCCGCCTTCAAGGGTACAGCTCCAATCAACTTGTCAGATCGGCTCAATCAGGTGCTTCGTTGGGCGCTGGGTTCGATTGAGATCTTCTTCAGTCCCCATTGCCCTGCTTGGTATGGCTACAAGGGTGGCAACAAGCTCAAGTGGCTTGAGCGATTCGCCTATGTCAACACTACTGTCTACCCTTTCACTTCTCTTCCTCTACTTGCCTACTGTATTCTTCCTGCTATTTGCTTGCTCACTGACAAGTTCATCATGCCTCCGATAAGCACTTTTGCCGGTTTGTACTTCGTTGCCTTGTTCTCTTCCATCATCGCAACGGGCTTGCTTGAGTTGAAATGGAGTGGAGTAAGCATAGAGGAGTGGTGGAGAAACGAGCAATTCTGGGTCATTGGTGGTGTATCAGCACATCTGTTTGCTGTCATACAAGGTCTTCTCAAGGTCCTAGCCGGAATCGACACAAACTTCACTGTTACATCAAAGGCAGCAGATGATGAGGACTTTGGAGAATTATACACCTTTAAATGGACCACTCTCCTAATCCCACCAACCACTATACTAATCGTCAATATTGTTGGTGTTGTTGCTGGAGTCTCAGATGCAATCAACAATGGCTACCAATCTTGGGGACCCCTATTTGGAAAGCTCTTCTTTTCCTTCTGGGTGATTGTTCATCTCTACCCATTCCTTAAAGGTTTGATGGGAAGACAAAACAGAACACCCACCATAGTTGTGATATGGTCAGTGCTGTTGGCTTCTATCTTCTCTCTGCTTTGGGTGAGAATTGACCCATTTGTGATGAAAACTAAGGGTCCTGATACCAAGATGTGTGGAATCAACTGCTGA 3132 0.4856 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDDVGLTVDGDLFVACNECGFPLCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDEDEEDVDDIEHEFKIAADEKNKHNHMAEAMLHGKMSYGRGPEDDDSSAQFPPVIAGNRSRPVSGEFSISSHGYGDQMLSSSLHKRIHPYPVSEPGSARGEEKNEDGWKDRMDDWKLQQGNLGPEPDEDPDAALLDEARQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRIMNPVHDAIGLWLTSIICEIWFAFSWILDQFPKWFPIERETYLDRLSVRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTILSILAMDYPVDKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFAIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRVNALVAKAQKVPAGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGCDTDGNLLPRLVYVSREKRPGFAHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAVREAMCFMMDPQTGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGRRRKQKYAKDGANAESAMLQQGMEDDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCNPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSPHCPAWYGYKGGNKLKWLERFAYVNTTVYPFTSLPLLAYCILPAICLLTDKFIMPPISTFAGLYFVALFSSIIATGLLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEDFGELYTFKWTTLLIPPTTILIVNIVGVVAGVSDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKMCGINC 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1388 1043 MobiDBLite consensus disorder prediction 184 204 - -
Acco04g1388 1043 Coils Coil 431 451 - -
Acco04g1388 1043 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Acco04g1388 1043 CDD mRING-HC-C4C4_CesA 35 85 - -
Acco04g1388 1043 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Acco04g1388 1043 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Acco04g1388 1043 MobiDBLite consensus disorder prediction 133 169 - -
Acco04g1388 1043 FunFam Cellulose synthase 19 110 - -
Acco04g1388 1043 Pfam Cellulose synthase 333 1037 IPR005150 GO:0016020|GO:0016760|GO:0030244
Acco04g1388 1043 FunFam Cellulose synthase 450 624 - -
Acco04g1388 1043 SUPERFAMILY Nucleotide-diphospho-sugar transferases 346 823 IPR029044 -
Acco04g1388 1043 SUPERFAMILY RING/U-box 21 105 - -
Acco04g1388 1043 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 236 1010 - -
Acco04g1388 1043 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 494 624 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1388 Acco-ChrAcco04 15329785 15335938 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1388 1 1043 Cell Wall Biosynthesis AT5G17420 84.962 0.0 1824
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g1388 04 15329785 15335938 Acco04g1388 04 15329785 15335938 ECH