Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1387 ATGGTGGAGAAATGCATTAGGATGAATAAGGGGATGAGTGAAATATTTTGTGTAGTACAAATTGCAGCTTCTCAGTTTTGTAAATGTATCAATGACATGTTTGGCTCAAATTTGCCCATGGATCGGGAAGTAAATCAAACTTGCAGATTTCCTAAGCCTGTGAAGAACTTAGATGGTCAGCTATGTGAGATATGTGGTGATTCTGTGGGGTATACAGTGGAAGGAGATTTGTTTGTGGCCTGTGAAGAGTGTGGTTTCCCTGTATGCAGGCCATGTTATGAGTATGAAAGAAGGGAAGGGACTCAAAATTGCCCTCAGTGCCAGACCAGATACAAGCGAATTAAAGGAAGCCCAAGAGTTGAGGGAGATGAAGATGAAGATGGCATTGATGATATTGAGCATGAGTTCAAAATGGAAGAAGAAAAGTACAAGCTCATGATAGGCCGTGGAGAAGATGACGACAATACTACATTACCAGTAGTAATAGCCAAGGTGAATGGAGAGGTTCCCAATGAAGTAAAGAAAACACACGCACTTGATTATAATAATCATAATGCTTTCAATGGAGCAGGAAATGAAAAGTTGGATGGAAAGACAGAGATAACAGAGGACTGGAAGATACATCAAGGCAATCTGTGGCCTGAAACTGATGCATCAGTTGATCCTGAAAAGGCCATGAGAGAAGAAGCTAGAAAGACACTCTCAAGGAAAGTAGCAATACCATCAGGTAGACTCAGCCCTTACAGGATGATGGTCGCAGCTCGGCTTGTGATTCTATTATTGTCCCTTCAGTACAGAGTCCTACATCCAGTGCCTGACGCAGTTGGACTCTGGCTTACATCTGTAATATGTGAAATATGGCTTACATTGTCGTGGATAATAGATCAGATTCCGAAATGGTTTCCCATTGACCGGGAGACATACCTAGATCGGCTTTCACTCAGGTTTGAACCAGAGAACAAGCCAAATTTGTTTCCCCCAGTAGATGTCTTTGTCACTACAGTGGATCCAATTAAGGAACCGCCACTAGTTACGGCTAATACTGTTCTTTCAATCTTGGCCATGGATTACCCTGCTAGTAAAATCTCATGCTATGTTTCTGATGATGGAGCTTCCCTGCTCACCTTTGAAGCTCTCCAAGAAACTGCAGAGTTTGCACGGAAGTGGGCGCCCTTCTGCAGAAAATATTCTCTAGAGCCTCGTGCACCAGAGAAGTACTTCTCTGAGAAGATTGATTTTCTAAAGGATAAGGTCCAGACTACTTATGTCAGAGACCGCCGTACTATGAAGAGAGAATATGAAGAATTCAAGGTCAGGATAAATTCACTCGTGGCTAAATCCATGAGAGTTCCCCATGAAGGGTGGACTATGCCAGATGGAACAGCATGGCCTGGAAACAATACCAACGATCACCCAGGTATGATACAAATTCTTCTTTCTCGGAGTGGAGGTGTTCAAGGAAATGAACTTCCATGTCTTGTCTACCTGTCACGTGAGAAAAGGCCAGGGTTTCAACACCACAGCAAAGCGGGAGCCTTGAATGCTTTGCTTCGGGTATCTGCATTGTTAAGCAATGCTCCTTTTGTGCTGAACTTGGATTGCAATCACTATGTGAACAATAGCAAGGCTGTGAGAGAGGCCATGTGTTTCTTCATGGACCTACAATTTGGAAAGAGCGTATGCTTTGTCCAGTTCCCGCTAAGATTTGACAGCCTCGATAAGCATGATCGTTATGCCAACAGAAATACTGTTTTATTTGATATAAACTTGAGGTGCCTTGATGGAATTCAAGGACCTATTTATATTGGTTCAGGATGCATGTTCCGGAGGAAAGCTTTAAATGGCAGTGAACCTCCGAAGACTTCAAAGCGCCCCAAAATGGGAGGCTGTGGATGCTGTCCTTGTTTTGGATCACGCAAGAAGCTACAAGTGCACTCTAAGCATGATGATGGCAATGAAGATGAGCCAAGCATGACAGGAACAGATGAAGACAAGCAGCTATTAACATCAGAGACAAATTTTGAAAATAAATTTGGGAAATCTGCAGTTTTTGTGAACTCTTCCATAAATGAAGAGGGTGGTATTCCTTCTACCTGTAATCAGGCAGCCTTGCTTAAAGAAGCCATTCATGTCATGAGTAGCCACTACGAAGACAGAACCCTATGGGGATACGAGGTCGGTTGGAACTATGGATCTATATCATCAGATATTCTGACAAGTTTTAAAATGCACTGTCTTGGTTGGAGATCTGTGTACTGCATGCCAGAAAGACCTGCTTTCAGGGGTACTGCTCCTATCAACCTTTCAGATCGACTCAGTCAAGTGTTAAGATGGGCAGTTGGATCACTTGAGATCCTTTTCAGCCGCCACTGCCCAATATGGTATACCTTAGGAGAAGGAAATCTCAAGGGACTTCAAAGAATTGCCTATATCAACAGCACAGTCTACCCTTTCAGCTCAATACCCATTATAATATATTGTCTCCTTCCTGCCGTTTGCCTGCTCACAGACAAGTTCATCACACCATCGATAAGTACCTTTGCAAGTATTCTCTTCATTGCACTGTTCATATCAATCTTCGCATCAAGCATTCTTGAGTTGAGATGGAGTGGAGTTACTCTTGAGGAATGGTGGAGAAATGAGCAATTCTGGGTTATTGGCAGTGTCTCAACGCACCTCTTTGCCATAGTGAGAAACTTTCTGAAGGCTGTGTCTAAAGTCGATATTAACTTCAGTGTCATATCAAAAGTACCATATGATGGGGAGTTCCATGACCTGTACACCTTTAGATGGACAGCCCTGCTAATACCTCCAACCACTATCATAATCATCAACCTTGTCGGTATTGTAGCTGGGTTTACAGATGCCATAAACAGTGGTGGACAATCTTGGGGAGCATTACTTGGGAAACTCTTCTTCTCCTTCTGGGTTTTGGTCCATCTATACCCATTCCTCAAAGGAATGACGGGTAAACAAAACAGAACACCAACCCTTGTTATCATATGGTCAGTGCTTTTGGCTTCTATCTTCTCCTTGGTTTGGGTAAGAATTGATCCTTTTGTGTTGAAAACAAAAGGGCCTGACGTTAAGCAGTGTGGAATCAGTTGCTGA 3111 0.4298 MVEKCIRMNKGMSEIFCVVQIAASQFCKCINDMFGSNLPMDREVNQTCRFPKPVKNLDGQLCEICGDSVGYTVEGDLFVACEECGFPVCRPCYEYERREGTQNCPQCQTRYKRIKGSPRVEGDEDEDGIDDIEHEFKMEEEKYKLMIGRGEDDDNTTLPVVIAKVNGEVPNEVKKTHALDYNNHNAFNGAGNEKLDGKTEITEDWKIHQGNLWPETDASVDPEKAMREEARKTLSRKVAIPSGRLSPYRMMVAARLVILLLSLQYRVLHPVPDAVGLWLTSVICEIWLTLSWIIDQIPKWFPIDRETYLDRLSLRFEPENKPNLFPPVDVFVTTVDPIKEPPLVTANTVLSILAMDYPASKISCYVSDDGASLLTFEALQETAEFARKWAPFCRKYSLEPRAPEKYFSEKIDFLKDKVQTTYVRDRRTMKREYEEFKVRINSLVAKSMRVPHEGWTMPDGTAWPGNNTNDHPGMIQILLSRSGGVQGNELPCLVYLSREKRPGFQHHSKAGALNALLRVSALLSNAPFVLNLDCNHYVNNSKAVREAMCFFMDLQFGKSVCFVQFPLRFDSLDKHDRYANRNTVLFDINLRCLDGIQGPIYIGSGCMFRRKALNGSEPPKTSKRPKMGGCGCCPCFGSRKKLQVHSKHDDGNEDEPSMTGTDEDKQLLTSETNFENKFGKSAVFVNSSINEEGGIPSTCNQAALLKEAIHVMSSHYEDRTLWGYEVGWNYGSISSDILTSFKMHCLGWRSVYCMPERPAFRGTAPINLSDRLSQVLRWAVGSLEILFSRHCPIWYTLGEGNLKGLQRIAYINSTVYPFSSIPIIIYCLLPAVCLLTDKFITPSISTFASILFIALFISIFASSILELRWSGVTLEEWWRNEQFWVIGSVSTHLFAIVRNFLKAVSKVDINFSVISKVPYDGEFHDLYTFRWTALLIPPTTIIIINLVGIVAGFTDAINSGGQSWGALLGKLFFSFWVLVHLYPFLKGMTGKQNRTPTLVIIWSVLLASIFSLVWVRIDPFVLKTKGPDVKQCGISC 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1387 1036 CDD mRING-HC-C4C4_CesA 60 110 - -
Acco04g1387 1036 Pfam Cellulose synthase 328 1030 IPR005150 GO:0016020|GO:0016760|GO:0030244
Acco04g1387 1036 SUPERFAMILY Nucleotide-diphospho-sugar transferases 340 859 IPR029044 -
Acco04g1387 1036 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 135 IPR013083 -
Acco04g1387 1036 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 232 1003 - -
Acco04g1387 1036 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 465 618 IPR029044 -
Acco04g1387 1036 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 317 419 IPR029044 -
Acco04g1387 1036 Pfam Zinc-binding RING-finger 52 128 IPR027934 -
Acco04g1387 1036 FunFam Cellulose synthase 43 135 - -
Acco04g1387 1036 ProSiteProfiles Zinc finger RING-type profile. 62 108 IPR001841 -
Acco04g1387 1036 SUPERFAMILY RING/U-box 50 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1387 Acco-ChrAcco04 15322954 15329672 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1387 51 1036 Cell Wall Biosynthesis AT5G17420 66.502 0.0 1397