Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1370 ATGGCGAAACTATCTCAGACGAAGAACAACGCCAGCAACAACAACAACCTTGGCGTCATCACTAACAGTACTACTAGTGTGTCCACCAAAGTGAAACGAACAAGAAGAAGTGTTCCTAGAGACTCTCCTCCTCAACGTAGCTCTATATATCGAGGAGTCACTAGGCACCGGTGGACTGGCCGGTATGAAGCTCACTTGTGGGACAAGAATTGTTGGATCGAGTCGCAGAACAAGAAAGGAAGACAAGGTGCTTATGACGATGAAGAAGCAGCGGCACATACTTATGATTTAGCTGCATTGAAGTACTGGGGCCAAGACACAATCCTCAACTTTCCGGTGGCAACGTACCTGAATGAAATGAAAGAAATGGGGGGTCAATCAAGAGAAGAATATATTGGATCGTTAAGGAGGAAAAGCAGTGGTTTTTCCCGGGGAGTTTCTAAATACAGAGGCGTTGCCAGACATCATCATAATGGAAGATGGGAAGCTCGGATTGGCAGAGTTTTCGGCAATAAATATCTCTATCTTGGTACTTATGCTACTCAAGAAGAAGCTGCCACGGCTTATGATAGGGCGGCTATTGAGTACCGGGGGCTTAACGCCATCACCAACTTCGATCTCAGCCGTTATATGAAGTGGCTTAAGCCTAATTCCAACGAAGACAATACTATTAATCTTAGTGGCCAATCTAACTGTGACCCTAAAGGTAACATTGTTACCACCTTAACGACATCAAACCATATAACTCAAGAACAAAGGTTGAGCTTCTTCCACAACCACCGGCTTCAGGAATCGTTCGACGTTAATGGCAGAGAAGAAGCCACGTTGTTGTCTCAGCCCCATCCAGCAGGGGCGGCGGTGGCAACTGCCACATCAGCCCTTGGGCTGCTGCTTCAGTCGTCCAAGTTCAAGGAAATGGTGGAGATGACGTCCACGGCGGATGATTTGTCCGCGTCGGTGGCACCGGAATCTGAGATGCCGCAGCATTACAGGTTTCCGGACGACATTCAGACGTACTTTGAGTGTCAAGATTCCAACAGTAATGGGGAAGGGGATGATCATTTCATGTTCAGTGAGCTCAACTCCTTCGTGCCTCCTCTATTCCACTGTGATGATTTTTGA 1122 0.4724 MAKLSQTKNNASNNNNLGVITNSTTSVSTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWIESQNKKGRQGAYDDEEAAAHTYDLAALKYWGQDTILNFPVATYLNEMKEMGGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDRAAIEYRGLNAITNFDLSRYMKWLKPNSNEDNTINLSGQSNCDPKGNIVTTLTTSNHITQEQRLSFFHNHRLQESFDVNGREEATLLSQPHPAGAAVATATSALGLLLQSSKFKEMVEMTSTADDLSASVAPESEMPQHYRFPDDIQTYFECQDSNSNGEGDDHFMFSELNSFVPPLFHCDDF 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1370 373 CDD AP2 147 208 IPR001471 GO:0003700|GO:0006355
Acco04g1370 373 MobiDBLite consensus disorder prediction 1 49 - -
Acco04g1370 373 MobiDBLite consensus disorder prediction 1 32 - -
Acco04g1370 373 SUPERFAMILY DNA-binding domain 147 208 IPR016177 GO:0003677
Acco04g1370 373 SMART rav1_2 148 212 IPR001471 GO:0003700|GO:0006355
Acco04g1370 373 SMART rav1_2 49 118 IPR001471 GO:0003700|GO:0006355
Acco04g1370 373 Pfam AP2 domain 147 198 IPR001471 GO:0003700|GO:0006355
Acco04g1370 373 Pfam AP2 domain 49 104 IPR001471 GO:0003700|GO:0006355
Acco04g1370 373 Gene3D AP2/ERF domain 49 114 IPR036955 GO:0003700|GO:0006355
Acco04g1370 373 Gene3D AP2/ERF domain 147 208 IPR036955 GO:0003700|GO:0006355
Acco04g1370 373 FunFam AP2-like ethylene-responsive transcription factor 48 114 - -
Acco04g1370 373 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 267 - -
Acco04g1370 373 SUPERFAMILY DNA-binding domain 48 113 IPR016177 GO:0003677
Acco04g1370 373 ProSiteProfiles AP2/ERF domain profile. 148 206 IPR001471 GO:0003700|GO:0006355
Acco04g1370 373 CDD AP2 48 114 IPR001471 GO:0003700|GO:0006355
Acco04g1370 373 ProSiteProfiles AP2/ERF domain profile. 49 112 IPR001471 GO:0003700|GO:0006355
Acco04g1370 373 FunFam AP2-like ethylene-responsive transcription factor 147 208 - -
Acco04g1370 373 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Acco04g1370 373 PRINTS Ethylene responsive element binding protein signature 188 208 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1370 Acco-ChrAcco04 15005829 15008503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1370 136 215 AP2-EREBP Transcription Factor Family AT5G57390 37.500 2.90e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Acco04g1370 AP2 7.1e-08 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g1370 04 15005829 15008503 Acco13g1104 13 9044834 9048008 CCT
Acco04g1370 04 15005829 15008503 Acco04g1370 04 15005829 15008503 ECH