Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1333 ATGCCTTTCAATTCGGTCGTTCTGCTTCTCCTCCTGCTCTTCTTCCTCTCTTCTGCTGGACTTTGTTTCTCTTCTGAGCCTCGCAACCATGAAGTGGAGGCTTTGATGAGCATAAGAAATGCTCTGACTGACCCGCATGGAGTCTTAAGCAACTGGGATGAGTACTCCGTGGACCCTTGCAGTTGGGCTATGATCACCTGTTCTGCTGACTCCCTTGTCATAGGCCTGGGAGCTCCTAGCCAATTTCTTTCTGGAACTCTATCAAGAGCAATTGCAAATCTGACCAATCTTCGACAAGTTTTACTTCAGAACAACAATATCTCTGGCAAAATCCCACGGGAGCTTGGTTCCCTTCCTAAGCTTCAAATCCTTGATCTTTCCAATAATCGATTCACGGGGGTTATTCCTGTGTCTCTGAGTCAGTTGAATAGTCTCCAGTACCTGAGGCTGAACAACAATAGTTTGTCTGGGCCATTTCCTGTGTTACTGTCCAAAATCCTGCAGCTTTCTTTCTTAGACTTGTCTTACAACAATCTCAGTGGACCATTACCCAAATCTCCAGCCAGAACATTGAACATTGTTGGAAACCCCTTAATTTGTGGAAGCAGTTCTACTGAAGGTTGCTATCGATCTGCAACCGTCTCACCTGTTCCTTTCACTCTAACATTTTCACAAGGAAATCACAAGTCCAAGAAGCTGGCAATTGCACTTGGGGTCGGTCTTAGCTTTGCTAGCATCATACTCCTGTCTTTTGGGATCTTATGGTACAGGAAGAGACGCCAAGCCATCTTGTACATCAATGATTGTCAAGAAGAGGGACTTGTTAGATTGGGAAATCTCAAAAGTTTCACTTTCAGAGAGCTCCAACACGCAACAGATAATTTCAGCTCCAGGAACTTACTTGGAGCAGGAGGTTTTGGCAATGTCTATCGGGGGAGGCTTGGAGATGGGACAATGGTGGCAGTGAAAAGGCTGAAGGATGTCAGTGGAAGTGCTGGGGAATTACAGTTTCAAACAGAAATGGAGATGATAAGCTTGGCAGTTCACCGTAATCTACTTCGCTTAATTGGATTTTGTTCTACTCCTAATGAAAAGCTTCTGGTTTATCCTTATATGTCTAATGGCAGTGTGGCATCGAGGCTCAGAGGCAAACCTTCTTTGGACTGGAATACAAGGAAGAGGATTGCCATTGGAGCTGCCAGAGGTCTTCTGTATCTTCATGAGCAATGTGATCCAAAGATAATACACAGAGATGTAAAGGCTGCTAATGTGCTTCTGGATGACTATTTTGAGGCCATTGTCGGTGATTTTGGGCTTGCAAAGCTCCTTGACCATGATGACTCTCATGTCACAACTGCTGTCCGTGGCACTGTCGGGCACATTGCACCAGAATACCTCTCCACTGGCCAATCTTCGGAGAAAACTGATGTATTTGGATTTGGCATTCTCTTGTTGGAGCTTATAACTGGAATGACAGCCTTTGAGTTTGGGAAAACAGTTAATCAAAAGGGCGCTATCCTAGAGTGGGTTAAGAAAATACAACATGAAAAGAAACTTGAAGTATTGGTGGACAAAGAGCTAGGCAGTCACTATGACTGGATAGAGGTGGGGGAGATGTTGCAAGTAGCTCTACTCTGCACTCAATATTTGCCGGCCCACCGCCCGAAGATGTCTGAAGTGGTCCGGATGCTTGAAGGCGATGGCCTCGCCGAGAAATGGGCAGCATCACATAATCAAGGTAGCCTTAGCATGAGCTCCTTTCACAGCAACAACTGCAACAGTTCATCATCCTGTCCTACCACCACTGCTTCAAATTCAAAACAGGATCGTTCCCACATGTTTGGCAAAGCAGTGGATGATGACGATGACGGACATTCTTTGGATTCCTTTGCCATGGAGCTCTCTGGTCCAAGATGA 1917 0.4554 MPFNSVVLLLLLLFFLSSAGLCFSSEPRNHEVEALMSIRNALTDPHGVLSNWDEYSVDPCSWAMITCSADSLVIGLGAPSQFLSGTLSRAIANLTNLRQVLLQNNNISGKIPRELGSLPKLQILDLSNNRFTGVIPVSLSQLNSLQYLRLNNNSLSGPFPVLLSKILQLSFLDLSYNNLSGPLPKSPARTLNIVGNPLICGSSSTEGCYRSATVSPVPFTLTFSQGNHKSKKLAIALGVGLSFASIILLSFGILWYRKRRQAILYINDCQEEGLVRLGNLKSFTFRELQHATDNFSSRNLLGAGGFGNVYRGRLGDGTMVAVKRLKDVSGSAGELQFQTEMEMISLAVHRNLLRLIGFCSTPNEKLLVYPYMSNGSVASRLRGKPSLDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYFEAIVGDFGLAKLLDHDDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTAFEFGKTVNQKGAILEWVKKIQHEKKLEVLVDKELGSHYDWIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLAEKWAASHNQGSLSMSSFHSNNCNSSSSCPTTTASNSKQDRSHMFGKAVDDDDDGHSLDSFAMELSGPR 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1333 638 FunFam Putative LRR receptor-like serine/threonine-protein kinase 28 210 - -
Acco04g1333 638 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Acco04g1333 638 FunFam Somatic embryogenesis receptor-like kinase 1 372 584 - -
Acco04g1333 638 Gene3D Ribonuclease Inhibitor 28 210 IPR032675 -
Acco04g1333 638 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 575 - -
Acco04g1333 638 SUPERFAMILY L domain-like 28 201 - -
Acco04g1333 638 FunFam Somatic embryogenesis receptor kinase 1 265 371 - -
Acco04g1333 638 Gene3D Phosphorylase Kinase; domain 1 265 371 - -
Acco04g1333 638 SUPERFAMILY Protein kinase-like (PK-like) 278 565 IPR011009 -
Acco04g1333 638 MobiDBLite consensus disorder prediction 593 638 - -
Acco04g1333 638 Gene3D Transferase(Phosphotransferase) domain 1 372 583 - -
Acco04g1333 638 MobiDBLite consensus disorder prediction 612 628 - -
Acco04g1333 638 PRINTS Leucine-rich repeat signature 121 134 - -
Acco04g1333 638 PRINTS Leucine-rich repeat signature 166 179 - -
Acco04g1333 638 MobiDBLite consensus disorder prediction 593 611 - -
Acco04g1333 638 Pfam Leucine rich repeat 119 179 IPR001611 GO:0005515
Acco04g1333 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Acco04g1333 638 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Acco04g1333 638 Pfam Protein kinase domain 298 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g1333 638 SMART serkin_6 295 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g1333 638 ProSiteProfiles Protein kinase domain profile. 295 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1333 Acco-ChrAcco04 14163401 14167461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1333 8 638 Receptor kinase-like Gene Family AT5G16000 63.297 0.0 779
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Acco04g1333 Pkinase 8.5e-42 CL0016