Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1313 ATGGAACGAACGCAACCACCACCGTTCTATCTATCTCACCCACATCTTCCTTCTTCTTCCTCTTCACTATCATCCAATTTTGGATCTGATAATGGTAGTTTCTTGAATTTAAACGACAAGGTGAGTCCTGGCATGCTACTAGTTATCATTATTCTGGCCATTGTCTTCTTCATTTCTGGGTTGATTCACCTTCTAGTTAGATTCCTATGGAGACCTCAACCCAGAGATCCAGATGATTTAGACAATGTCTCTGCTCTTCAAGGCCAATTACAGCAACTTTTTCACCTTCACGATGCTGGGGTTGACCAGTCCTTCATAGATAACACCCTCCCCGTGTTCCATTACAAAGCCATCATAGGATTGAAGGACCCATTTGATTGCGCTGTGTGCTTGTGTGAATTTGAAGCTGATGATAAACTCAGATTGTTACCCAAATGTAGCCATGCTTTTCACATGGAGTGTATTGATACTTGGCTCATGTCTCACTCAACTTGCCCTCTCTGCAGAGCTAGCTTGCTATCTGATTTCTCTCCTACAAACGCTTCTCCTCCTCCTCCTCCTTTTGTCTTCGTTCTAGAATCTGGGAGTGAAAGTTCCAGAGAGATTGTTCCAGAAAGAGAGAGCACAGTTGGTAATGGTAGGACCAGTTCTGTGATTGGAGATAACGAACTTGGGTTAACCCATGTGGATTTGTCACACAAGTCTGTTGATTCAAGTTCAGATGGTAATGCTGATCAGGTTGCAGATGAGAAAGTGGTCACTGTGAAGCTGGGAAAGTTCAGGAATGTGGACTGTGTTGGAGAAGGAAGCAGTGTAGAAGACATGGGAGAAGCTAGAAGGTGTCTTTCTATGGGGGCATTTGCTTATGTTATGGACCACAATTCTTCACTTCAAGTACCAGTAAGAGCAACGATGAAGAAGCAGTCAAGTAAGAAACCTGCTTTGCCTTTAACACCAGGACGCAGGATTGCCATGTCAGAATGTGATTGTGAGTCCTCCAGAGATTTCAAATTCACTGGTTTTGACACAGTCAAAGGTTTTGAGAGTTCATCTGAAACTGCGAGTATTGTTGAGAGAAGCAAAAAAGAGAGCTTTTCAGTTTCAAAGATTTGGCTTCGAGGAAAGCAAGAGAAGCCACAAGCTATGGCCGATTCATCCTCAAGAAGGGCTGTTTCGCTTCGATTCTCGGCGGCGATGGAAGATTTAAAGGAGAAGAGTGGGAAGTGGGAAATTGATGATGAAAATCAGAGCTGTTACAGTGTGGATTCTCAGGGCAGAGCACCTTTTGCAAGAAGAACTCTGCTTTGGCTTACTGGGAAACAGAACAAGGTTGTTCATTCATCTTTTGCTTCAAACTTGTAG 1362 0.4347 MERTQPPPFYLSHPHLPSSSSSLSSNFGSDNGSFLNLNDKVSPGMLLVIIILAIVFFISGLIHLLVRFLWRPQPRDPDDLDNVSALQGQLQQLFHLHDAGVDQSFIDNTLPVFHYKAIIGLKDPFDCAVCLCEFEADDKLRLLPKCSHAFHMECIDTWLMSHSTCPLCRASLLSDFSPTNASPPPPPFVFVLESGSESSREIVPERESTVGNGRTSSVIGDNELGLTHVDLSHKSVDSSSDGNADQVADEKVVTVKLGKFRNVDCVGEGSSVEDMGEARRCLSMGAFAYVMDHNSSLQVPVRATMKKQSSKKPALPLTPGRRIAMSECDCESSRDFKFTGFDTVKGFESSSETASIVERSKKESFSVSKIWLRGKQEKPQAMADSSSRRAVSLRFSAAMEDLKEKSGKWEIDDENQSCYSVDSQGRAPFARRTLLWLTGKQNKVVHSSFASNL 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1313 453 CDD RING-H2_EL5-like 126 169 - -
Acco04g1313 453 SMART ring_2 127 168 IPR001841 -
Acco04g1313 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 174 IPR013083 -
Acco04g1313 453 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 38 371 - -
Acco04g1313 453 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Acco04g1313 453 SUPERFAMILY RING/U-box 108 177 - -
Acco04g1313 453 FunFam RING-H2 finger protein ATL46 88 174 - -
Acco04g1313 453 Pfam Ring finger domain 126 169 IPR001841 -
Acco04g1313 453 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1313 Acco-ChrAcco04 13817222 13818583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1313 31 451 C3H Transcription Factor Family AT2G18650 49.885 1.31e-103 313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g1313 04 13817222 13818583 Acco04g1313 04 13817222 13818583 ECH