LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco04g1294	ATGGGATCCTCCATGAGCTGCTGTGGTGGTTCAGACAAGGTGGAAGAAGTGCCAGGATCAAGTAGTGTGGTGAGCAATAATAGTAATTCATGGAGAATATTCACATACAAGGAGTTACATGCAGCTACAAATGGTTTCAGTGAGGATTGTAAACTTGGTGAAGGTGGCTTTGGAAGTGTCTACTGGGGAAAAACCACGGACGGTCTCCAGATAGCAGTGAAGAAACTGAAAGCGATGAACTCAAAGGCAGAGATGGAATTTGCAGTAGAAGTAGAAGTTCTGGGAAGAGTGAGGCACAAGAACTTGCTAGGGCTAAGAGGTTACTGCGCCGGCGATGAACAAAGACTAATAGTGTACGATTACATGCCAAATCTCAGCCTTCTATCTCACCTCCATGGCCAGTTCGCTAATGAAGTCCAGCTTGACTGGAAAAGAAGAATGAACATCGCCATCGGCTCTGCTCAAGGCCTATTGTACCTGCATCACGAGGTTACGCCTCATATAATCCACAGAGATATAAAGGCAAGCAATGTTCTGTTGAACTCAGACTTCGAGCCACTGGTTGCTGATTTTGGGTTTGCAAAGCTAATCCCAGAAGGGGTAAGCCACCTAACGACCCGTGTGAAGGGCACATTAGGGTACTTGGCTCCTGAGTATGCCATGTGGGGTAAGGTATCCGAAAGTTGCGATGTTTATAGCTTTGGAATTCTTCTCCTAGAACTGGTCACAGGAAGAAAGCCCATAGAGAAGCTACCAGGAGGCCTAAAGAGAACCATAACTGAGTGGGCTGAACCTTTCATAACCAAAGGCAAGTTCAGGGACATGGTGGATCGAAGACTTCGAGGAAACTTCGACGAGCGACAAGTCGAGCAGATGATCAATGTGGCTGCACTTTGTGTTCAGAGTGAGCCCGATAAGAGACCAAACATGAAGCAAGTGGTTAATTTGTTAAAAGGGTGTGATGCTGATCATGGGAAGGTGATGAAGACGAGGATTGATAGTATTCAGTATAATGAACAGCTTATGGAGCTTGATCAGAACAGTGATGACGATGAAGATGAAACTAATGGTGGGTATGGTGTTTTTAGTGCTCTTGAGGTTCAAAAGATGCATGATCCTTACAAGCGTCATGGTGATGCAAAAATGGCGAAACCTGCAATTTGA	1164	0.4536	MGSSMSCCGGSDKVEEVPGSSSVVSNNSNSWRIFTYKELHAATNGFSEDCKLGEGGFGSVYWGKTTDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCAGDEQRLIVYDYMPNLSLLSHLHGQFANEVQLDWKRRMNIAIGSAQGLLYLHHEVTPHIIHRDIKASNVLLNSDFEPLVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGLKRTITEWAEPFITKGKFRDMVDRRLRGNFDERQVEQMINVAALCVQSEPDKRPNMKQVVNLLKGCDADHGKVMKTRIDSIQYNEQLMELDQNSDDDEDETNGGYGVFSALEVQKMHDPYKRHGDAKMAKPAI	387

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco04g1294	387	CDD	STKc_IRAK	52	319	-	-
	Acco04g1294	387	FunFam	PTI1-like tyrosine-protein kinase At3g15890	122	335	-	-
	Acco04g1294	387	PANTHER	OS01G0253100 PROTEIN	26	322	-	-
	Acco04g1294	387	Gene3D	Phosphorylase Kinase; domain 1	19	121	-	-
	Acco04g1294	387	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	168	180	IPR008271	GO:0004672\|GO:0006468
	Acco04g1294	387	ProSiteProfiles	Protein kinase domain profile.	46	327	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco04g1294	387	SMART	serkin_6	46	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco04g1294	387	MobiDBLite	consensus disorder prediction	1	24	-	-
	Acco04g1294	387	Gene3D	Transferase(Phosphotransferase) domain 1	122	344	-	-
	Acco04g1294	387	Pfam	Protein tyrosine and serine/threonine kinase	50	317	IPR001245	GO:0004672\|GO:0006468
	Acco04g1294	387	SUPERFAMILY	Protein kinase-like (PK-like)	27	327	IPR011009	-
	Acco04g1294	387	FunFam	PTI1-like tyrosine-protein kinase At3g15890	19	121	-	-
	Acco04g1294	387	ProSitePatterns	Protein kinases ATP-binding region signature.	52	75	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco04g1294	Acco-ChrAcco04	13360384	13362613	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco04g1294	9	358	Trihelix Transcription Factor Family	AT1G70460	44.598	1.62e-97	303

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XV	Acco04g1294		PK_Tyr_Ser-Thr	5.2e-44	CL0016