Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1293 ATGATGCTTTCTTCTTCACCTAGTAAAATACTAATTGGTCTGTCCTTAGACCCAGATGATAGCAGAGAACTTCTCTCATGGCCAATAAGAGTCCTAGCCAATCCTAACGACACCATTGTTGCCTTGCATGTTCTTGTTTCTAAGGATAAGAAGAAGAAGAGGAAGAAGCGTGGTTCAATAACAAGAAGGCAGTCACAACTTCGACAGGCTAAAGCCTATGTCATATCTCTGCTTGGTGAATTTGCAAAGATGTGTTGGTCTAAGCAGGTGAATCTGGAAGCCAAAGTGGCATTTGGTTCCAATGTAGGTGTAGGTTTGGTTGAAGAAGCCAAGTCAATATCTGCTGACTATCTTCTTCTTCGTGGTTCTAGAAACCAGTCCAAGAAGAATCAGGCCTCTAATGAAATCACCAAGTACTGCTATAAGAATGTTCAGGAAAGCTGCACTGTAGTCTCAGTTGGGAAAAGCTCAAAATCCAGTTTTACAGATTCTCAAGATAATTATGAATCAAAGTCAGGGTGCTTTATGAAGGATAGGGAAGGTGACAGGGGAGCCTCCCCTGTTTTGAAGGCTTTTATTTCAGACTCGAACTCAAAGACTCAAACACGTTCTCCAAGAACAGTATTGGATGCACTTGAGGGACAATCTAACAGCACAGAATATGACACATTTAGCACAAGGGTCTCAAGCATCACAGACACTCCCTCAACAGGTTCTAAAATGAGAAGCCAATCCAATAATTTAAGGAAACCACAGTCACCATTTAGACGCATAGCCTCCCTCCTTGCCTCTCCACTTAGAAGGAAACACTCCAAAAAGTCCCAAAATGAAAAGAGACAACCTTTGTTAAAATGCTTCAGCTATGAGGAGATCTCCAACGCCACAAAAGGCTTCCACCAAGATAATTTGGTGGGACGAGGTGGGTACTCTGAAGTATACAGAGGAGATCTTTGTAATGGACAAACTATTGCAGTGAAAAGGTTGTCCAAGGACAACAAGGATGCTAACAAGGAAAAGGAGTTCCTTATGGAATTAGGAGTCATTGGACATGTCTGTCATCCTAATACTGCATCTTTAGTTGGTTGCTGCATTGAAAATGGACTCTACCTGATTTTCAAGTACTCTCAAAATGGAAACTTGGCCACTGCACTGCATGGTAAATCAGGAACTTCACTTGACTGGCCAGTTAGATACAAAATCGCCATTGGAGTCGCAAGAGGGCTGCATTATCTTCACAAGTGTTGCAAACGCAGAATAATTCATCGTGACATTAAAGCCTCCAATGTGCTTCTGGGTCCAGATTATGAACCACAGATTACTGATTTTGGGCTAGCAAAGTGGCTTCCAAACAAGTGGACCCACCATGCTGTAATACCAGTGGAAGGAACGTTTGGGTACTTGGCACCAGAGTCCTTCATGCATGGAATAGTGGATGAGAAAACTGATGTTTATGCATTTGGGATTCTTCTTCTGGAGATTATAACTGGAAGAAGACCTGTTGATTCTAAGAAACAGAACCTTCTACTTTGGGCAAAGCCTCTGATGGAATCAGGGAACTTTAAGGAGCTAGCTGATCCGAGAATGGAAGGTATATATGATGAAGAGGAATTGAACAGAATAGTGGTCACTGCTTCATACTGTGTGAAACAATCTCCACTTTGGCGTCCCTCAATGAGCGAGGTGTTGGAACTGCTAACTAACGGAGAAGACAGTGAGGCTGGGAATAGCTGGAGGATCCCACAGTTCACATCTGATGAATTGGATGATTATTCTATGGCCTTTGGATATGAAGTGCCTTCTGATATATCTCTTGAGGATTTTTTGTGA 1827 0.4236 MMLSSSPSKILIGLSLDPDDSRELLSWPIRVLANPNDTIVALHVLVSKDKKKKRKKRGSITRRQSQLRQAKAYVISLLGEFAKMCWSKQVNLEAKVAFGSNVGVGLVEEAKSISADYLLLRGSRNQSKKNQASNEITKYCYKNVQESCTVVSVGKSSKSSFTDSQDNYESKSGCFMKDREGDRGASPVLKAFISDSNSKTQTRSPRTVLDALEGQSNSTEYDTFSTRVSSITDTPSTGSKMRSQSNNLRKPQSPFRRIASLLASPLRRKHSKKSQNEKRQPLLKCFSYEEISNATKGFHQDNLVGRGGYSEVYRGDLCNGQTIAVKRLSKDNKDANKEKEFLMELGVIGHVCHPNTASLVGCCIENGLYLIFKYSQNGNLATALHGKSGTSLDWPVRYKIAIGVARGLHYLHKCCKRRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPESFMHGIVDEKTDVYAFGILLLEIITGRRPVDSKKQNLLLWAKPLMESGNFKELADPRMEGIYDEEELNRIVVTASYCVKQSPLWRPSMSEVLELLTNGEDSEAGNSWRIPQFTSDELDDYSMAFGYEVPSDISLEDFL 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1293 608 Pfam Protein tyrosine and serine/threonine kinase 300 564 IPR001245 GO:0004672|GO:0006468
Acco04g1293 608 PANTHER OS08G0249100 PROTEIN 64 578 IPR046958 -
Acco04g1293 608 Pfam Universal stress protein family 9 151 IPR006016 -
Acco04g1293 608 Gene3D Phosphorylase Kinase; domain 1 258 374 - -
Acco04g1293 608 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 375 579 - -
Acco04g1293 608 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 121 - -
Acco04g1293 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Acco04g1293 608 MobiDBLite consensus disorder prediction 223 255 - -
Acco04g1293 608 Coils Coil 325 345 - -
Acco04g1293 608 ProSiteProfiles Protein kinase domain profile. 298 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g1293 608 Gene3D Transferase(Phosphotransferase) domain 1 376 580 - -
Acco04g1293 608 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Acco04g1293 608 MobiDBLite consensus disorder prediction 223 253 - -
Acco04g1293 608 SUPERFAMILY Protein kinase-like (PK-like) 275 565 IPR011009 -
Acco04g1293 608 FunFam Putative receptor-like serine/threonine-protein kinase 265 374 - -
Acco04g1293 608 Gene3D HUPs 2 153 IPR014729 -
Acco04g1293 608 SMART serkin_6 298 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1293 Acco-ChrAcco04 13352851 13355836 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1293 286 604 Trihelix Transcription Factor Family AT1G70460 40.653 5.77e-75 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Acco04g1293 PK_Tyr_Ser-Thr 1.1e-41 CL0016