Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1292 ATGCAGTCTTTTTACGCCCCTAAATCCTCGCAGGTTCTTCCCACAACTCAAATTCGCATCCAATCAGCAAATAGGTTTATTCCTCTCCCATTCAAAATCTTCTTTCTCAAATCTATGGGGATTGAGAGAGGAGGCCTTAGAGGCTTACGTGGTGGGTGGAGCGTTGCGGCTAAGCCATGCGACTCCTGCAAATCGGCGGCCTCCGCTGTGTTCTGCCGTGCCGATTCTGCCTTCCTCTGCTTGCCCTGTGACACCCGAATTCACTGCGGTGAAAAGCTCGGTTCCCGCCATGAACGTGTTTGGATGTGCGAGGTTTGTGAGCAGGCCCCTGCTTCCGTCACCTGCAAGGCCGACGCCGCCGCTCTCTGTGTCACCTGCGATTCCGACATCCATTCCGCCAACCCCCTCGCTCGCCGCCACGAGCGGGTCCCGGTGGAGCCCTTTTATGACTCTGCTGACTTGGTGGTGAAATCCTCTGCCTCTGTTGCCGCTTTCAACTTCTTCGTGCCCAACAATAACGGAATTTGCTCTGATGGGTTTCAAACTGACGATCCCGAACCAGTTCCGTGGATGGTCCCTAACCACCAGAACTTCAATTCCAAGGCGATGGGTGTTCCGGAAGTCAAGTCCGGCGACATGTTCTTCTCGGAAATGGATCCGTTCATGGAGTTCGATTACTCAAATTCTTATCAGAATAGCAACAATCACGGCCCGGCGAACGACAGCGTTGTGCCAGTTCAAAACAAACCCGTTACGGTTCCGATGATCAATCACTCGGAGAGTTGCTTCGATATTGATTTTTGCAGATCGAAGCTTTCTTCTTTTAGCAGCTACCCAAGCCAAAGTGTTTCATCGTCTTCGCTTGACGTTGGGGTTGTACCAGACTCAGTGTCAGAAATGTCGTTCTCGTTGGGGCGAAACATGAGCAACAGCTCCGAATCGGGCGGAATCGGGTCGGCAAGTAACAACCAGGCAACCCAACTGGGTGGGATGGACCGGGAAGCTAGGGTGTTGAGGTACAGAGAGAAAAGGAAGAACCGGAAGTTCGAGAAAACCATCCGGTACGCTTCGAGGAAAGCTTACGCGGAGACCCGACCCAGGATCAAGGGCCGGTTCGCTAAACGGAGCGAAACCGAGTCGGAGGTAGACCGGGTGTACAGCCCCGTCAGCACAGGTGGACTGATGATGGAAGCTCAGTACGGCATCGTACCATCGTTTTAA 1221 0.5324 MQSFYAPKSSQVLPTTQIRIQSANRFIPLPFKIFFLKSMGIERGGLRGLRGGWSVAAKPCDSCKSAASAVFCRADSAFLCLPCDTRIHCGEKLGSRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFYDSADLVVKSSASVAAFNFFVPNNNGICSDGFQTDDPEPVPWMVPNHQNFNSKAMGVPEVKSGDMFFSEMDPFMEFDYSNSYQNSNNHGPANDSVVPVQNKPVTVPMINHSESCFDIDFCRSKLSSFSSYPSQSVSSSSLDVGVVPDSVSEMSFSLGRNMSNSSESGGIGSASNNQATQLGGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSETESEVDRVYSPVSTGGLMMEAQYGIVPSF 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1292 406 ProSiteProfiles Zinc finger B-box type profile. 98 145 IPR000315 GO:0008270
Acco04g1292 406 MobiDBLite consensus disorder prediction 303 329 - -
Acco04g1292 406 CDD Bbox1_BBX-like 59 102 - -
Acco04g1292 406 Pfam CCT motif 333 375 IPR010402 GO:0005515
Acco04g1292 406 Pfam B-box zinc finger 100 145 IPR000315 GO:0008270
Acco04g1292 406 CDD Bbox1_BBX-like 103 145 - -
Acco04g1292 406 MobiDBLite consensus disorder prediction 303 335 - -
Acco04g1292 406 ProSiteProfiles CCT domain profile. 333 375 IPR010402 GO:0005515
Acco04g1292 406 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 59 387 IPR045281 GO:0009909
Acco04g1292 406 SMART bboxneu5 55 102 IPR000315 GO:0008270
Acco04g1292 406 SMART bboxneu5 103 145 IPR000315 GO:0008270
Acco04g1292 406 ProSiteProfiles Zinc finger B-box type profile. 55 102 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1292 Acco-ChrAcco04 13331557 13334590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1292 39 406 C2C2-CO-like Transcription Factor Family AT5G57660 52.105 2.89e-121 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Acco04g1292 zf-B_box 4.9e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g1292 04 13331557 13334590 Acco04g1292 04 13331557 13334590 ECH