Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1270 ATGAGCTTCCGTTCCTCTTCATCTTCTAAGGCTTCTTTTCATCATCATCCTTCAAATGATATCAATAATCTTAACCTAGACCTTCTCCTTGAGCTTTCTTCATCTTCTTCTAATTCATCTTCTCCTCCATCAGCAAATTACAGTAGTAGTAGTACCATGGAGCCTCGGGTTTTCTCGTGCAACTATTGCCAGAGAAAGTTCTACAGCTCACAAGCTCTTGGAGGTCACCAGAATGCACACAAGTTGGAGAGGATACTGGCCAAGAAGAGCAGAGAACTCAGTTCAATGCACAATAATTTTGAGCTCTCTACTGCTGATCACAACAGGTCTGGCTCGAGCAGTCTTGTTGCTTGTGTGGGCTCATCACTAAGCCACGGCCAAGTTGGTGGTGGGGTTAGCTATGAAAGAAGAGAGTTTAACTATGGTGGTGGTTCCAATAACTTCAGGTCTTCTGAAAGTAATGTTCATGATCAGCAGGAAGATATTGGTCAACTTGACTTGTCTTTGAGGCTTTAA 516 0.4302 MSFRSSSSSKASFHHHPSNDINNLNLDLLLELSSSSSNSSSPPSANYSSSSTMEPRVFSCNYCQRKFYSSQALGGHQNAHKLERILAKKSRELSSMHNNFELSTADHNRSGSSSLVACVGSSLSHGQVGGGVSYERREFNYGGGSNNFRSSESNVHDQQEDIGQLDLSLRL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1270 171 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Acco04g1270 171 Gene3D Classic Zinc Finger 33 113 - -
Acco04g1270 171 SUPERFAMILY beta-beta-alpha zinc fingers 55 85 IPR036236 -
Acco04g1270 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Acco04g1270 171 FunFam Zinc finger protein 2 34 105 - -
Acco04g1270 171 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 12 110 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1270 Acco-ChrAcco04 12992776 12993291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1270 1 171 C2H2 Transcription Factor Family AT5G57520 47.701 3.94e-26 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco04g1270 None None None