Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1242 ATGGACTCTTCTTCTCACAACTGGCTCGCTTTCTCTCTCTTCCCTCCGTCTTTCTCTTCCCCACCTCCAGCCCCAGGGAGCACCATCGATGCCTCGCCGGATGCGGATGTCGGAGGTGGTGGTGCAACCAACAACCATCTCTCAGTCTTCGCTGGAACCGCCCCGAAGTTTGAGGACTTCCTGGGCGGCACTTTCTCCTCCGCTACATCGGTCACAGCTGCAGTACCCACGCCGCCTCACTTCTCCACCGACAACGTCTTCGGTTCTGAGCTCAAAAACATAGCCGCCGGTTTCCTCCCCGGCTTGGCAGCCGCTGAGCAACCGCAACCGCAAAAGCAGTCGCTGGCTCTGGCCGTGCCGTCTAATAAGAAAACTGCGGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACTCGGCATAGATGGACGGGGAGATATGAAGCTCATCTATGGGATAATAGTTGCAGAAGAGAAGGCCAAAGTAGGAAAGGAAGGCAAGGTGGCTATGATAAGGAAGAGAAAGCAGCCACAGCATATGATCTTGCTGCTCTCAAATATTGGGGTCCAACCACCACCACCAACTTCCCAATTTCCAACTATGAGAAGGAACTGGAACAGATGAAGAACATGACAAGGCAAGAATTTGTTGCTTCATTACGAAGGAAGAGTAGTGGTTTCTCTAGAGGGGCCTCAATCTACAGAGGAGTGACGAGGCACCACCAGCATGGGCGATGGCAAGCAAGAATCGGCAGAGTTGCCGGAAATAAAGATCTTTATCTCGGCACTTTTAGTACTCAAGAAGAAGCTGCTGAAGCATATGATATAGCAGCCATAAAATTTAGAGGACTAAGTGCGGTGACCAACTTTGACATGAGCCGATACGATGTCAAGAGCATAGCCAGCAGCAATCTTCCAATAGGAGGATTCTCATCCTCCAAAGCCAGAAACTCATCAGATTCTTCTGCAGCATCAGACAACAGCAAAAGCAATGAGGGAAACCGATCAACAACCAATAACAACAACATCATTATCGACCGAGATCAATCATCTTCATCGGCCTCCAACCTCAGCTTCGCCATAAAACAAGACCCAACCGCCATAGATTACTGGTCCAATATCTTCGGTTACCAAAACCAGTACAAAAACACTAGTACTCCTAACAATGTTACAATTGCCTCTCCTTTACAGAACTACAATGATGGCGCATTCGGCTTGGAGTTACAGAGAGACAACAACAACAACGCATTTATGGATGGGGGTGTGATTGTTCAGAACATTCAGCAGCAGCAACAACAAAGTGGAACCAATAATAACAACAATAGTACTGGAACTGGGGATTCGTGTTCAAGTTCAGGGATTCCATTGGCCACACCAATAGGTATAAATAGTAATATTAGTTATGAGGATTCTTCCGGATATGGAAACTGGAGTATAGGGCCTGGTGGTCTGCACACTTTCCAAACACACTCAAAAGGAAGTCTCTTTCAAACGCCAATATTTGGAATTGAATGA 1518 0.4809 MDSSSHNWLAFSLFPPSFSSPPPAPGSTIDASPDADVGGGGATNNHLSVFAGTAPKFEDFLGGTFSSATSVTAAVPTPPHFSTDNVFGSELKNIAAGFLPGLAAAEQPQPQKQSLALAVPSNKKTADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAATAYDLAALKYWGPTTTTNFPISNYEKELEQMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLSAVTNFDMSRYDVKSIASSNLPIGGFSSSKARNSSDSSAASDNSKSNEGNRSTTNNNNIIIDRDQSSSSASNLSFAIKQDPTAIDYWSNIFGYQNQYKNTSTPNNVTIASPLQNYNDGAFGLELQRDNNNNAFMDGGVIVQNIQQQQQQSGTNNNNNSTGTGDSCSSSGIPLATPIGINSNISYEDSSGYGNWSIGPGGLHTFQTHSKGSLFQTPIFGIE 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1242 505 PRINTS Ethylene responsive element binding protein signature 274 294 IPR001471 GO:0003700|GO:0006355
Acco04g1242 505 PRINTS Ethylene responsive element binding protein signature 136 147 IPR001471 GO:0003700|GO:0006355
Acco04g1242 505 CDD AP2 233 294 IPR001471 GO:0003700|GO:0006355
Acco04g1242 505 MobiDBLite consensus disorder prediction 20 40 - -
Acco04g1242 505 FunFam AP2-like ethylene-responsive transcription factor 233 294 - -
Acco04g1242 505 CDD AP2 134 200 IPR001471 GO:0003700|GO:0006355
Acco04g1242 505 SUPERFAMILY DNA-binding domain 134 200 IPR016177 GO:0003677
Acco04g1242 505 ProSiteProfiles AP2/ERF domain profile. 135 198 IPR001471 GO:0003700|GO:0006355
Acco04g1242 505 MobiDBLite consensus disorder prediction 312 350 - -
Acco04g1242 505 FunFam AP2-like ethylene-responsive transcription factor ANT 134 200 - -
Acco04g1242 505 Pfam AP2 domain 135 190 IPR001471 GO:0003700|GO:0006355
Acco04g1242 505 Pfam AP2 domain 234 284 IPR001471 GO:0003700|GO:0006355
Acco04g1242 505 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 97 390 - -
Acco04g1242 505 SUPERFAMILY DNA-binding domain 233 294 IPR016177 GO:0003677
Acco04g1242 505 ProSiteProfiles AP2/ERF domain profile. 234 292 IPR001471 GO:0003700|GO:0006355
Acco04g1242 505 Gene3D AP2/ERF domain 135 200 IPR036955 GO:0003700|GO:0006355
Acco04g1242 505 Gene3D AP2/ERF domain 234 294 IPR036955 GO:0003700|GO:0006355
Acco04g1242 505 MobiDBLite consensus disorder prediction 430 451 - -
Acco04g1242 505 SMART rav1_2 135 204 IPR001471 GO:0003700|GO:0006355
Acco04g1242 505 SMART rav1_2 234 298 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1242 Acco-ChrAcco04 12592864 12595915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1242 78 505 AP2-EREBP Transcription Factor Family AT5G57390 53.950 2.84e-142 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Acco04g1242 AP2 6.4e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g1242 04 12592864 12595915 Acco04g1242 04 12592864 12595915 ECH