Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1240 ATGAAGTATATTAGGAGCAACAGCTTCAAGCGTCTCTTCTCCTTCAAACGACGAAGTTTTGGCGAACCAGTTTTGAGCCCTGAAGATAAAGAAACTCCCGATAGACCCACTTGGAAATGCTTCTCATATCAAGAACTATTTGATGCCACCAATGGCTTCTGCTCTGAGAACATTGTTGGAAAAGGAGGGTATGCAGAGGTTTATAAGGGGAAATTAGAAGATAATGAGGAAATTGCAGTGAAGAGGCTCACAAAAAGCTGTAACGATGCGAGGAAAGAGAAGGAATTTCTGACAGAGATTGGAACAATTGGCCATGTTTGTCATCCAAATGTTTTACCTCTTCTTGGTTGCTGTATTGACAGTGGGCTTTATCTTGTCTTTGTGTTTTCCTCTAGAGGCTCTGTTGCTTCTCTTCTTCATGATGAGAATGAGCCTGTAATGGGTTGGAAGATAAGGCATAAGATTGCTCTTGGGACAGCACGTGGCCTCCATTACTTGCACAAAGGTTGCCAAAGAAGGATAATTCATAGAGACATTAAGGCCTCCAATGTTCTTTTGACTTCAGATTTTGAACCACAGATATCTGATTTTGGACTGGCCAAATGGCTTCCTTCTCAGTGGACTCATCATTCCATTGCCCCAATTGAAGGCACATTTGGGCACTTGGCTCCTGAGTATTACCTGCATGGAATAGTGGATGAGAAAACTGATGTATTTGCATTTGGGGTGTTTCTGCTAGAACTCATCTCAGGGAAGAAACCTGTGCATGGATTAAACCAGAGTTTACACAATTGGGCTAGGCCAATATTGAAGAGAGGAGAGCTAGAGAAAGTGGTAGATCCAAGCCTTGAAGGAGCTTATGATGTTTCAGAGTTAACAAGGCTTGCTTTTGCAGCTTCTTTGTGTATCCGATCATCTTCCACTTGGAGACCCACCATGACTCAGGTATTAGAGGTAATGGAGGAGGAAGAAATAGATAAAGATAAATGGAAAATGCAAGAGAACGAGGAGGAGGAAGAAGATGTGATATGGGGTTTTGATGATTTGGAATATGAATATGATAGTTTGTCCTCAATGTCTCTCCCTGACTCTGTTATAAATAATTAA 1107 0.4155 MKYIRSNSFKRLFSFKRRSFGEPVLSPEDKETPDRPTWKCFSYQELFDATNGFCSENIVGKGGYAEVYKGKLEDNEEIAVKRLTKSCNDARKEKEFLTEIGTIGHVCHPNVLPLLGCCIDSGLYLVFVFSSRGSVASLLHDENEPVMGWKIRHKIALGTARGLHYLHKGCQRRIIHRDIKASNVLLTSDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGIVDEKTDVFAFGVFLLELISGKKPVHGLNQSLHNWARPILKRGELEKVVDPSLEGAYDVSELTRLAFAASLCIRSSSTWRPTMTQVLEVMEEEEIDKDKWKMQENEEEEEDVIWGFDDLEYEYDSLSSMSLPDSVINN 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1240 368 Coils Coil 80 100 - -
Acco04g1240 368 Pfam Protein tyrosine and serine/threonine kinase 57 261 IPR001245 GO:0004672|GO:0006468
Acco04g1240 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Acco04g1240 368 Coils Coil 320 340 - -
Acco04g1240 368 FunFam Putative receptor-like serine/threonine-protein kinase 23 129 - -
Acco04g1240 368 Gene3D Transferase(Phosphotransferase) domain 1 131 347 - -
Acco04g1240 368 ProSiteProfiles Protein kinase domain profile. 53 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g1240 368 SMART serkin_6 53 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g1240 368 Gene3D Phosphorylase Kinase; domain 1 25 129 - -
Acco04g1240 368 CDD STKc_IRAK 59 322 - -
Acco04g1240 368 ProSitePatterns Protein kinases ATP-binding region signature. 59 81 IPR017441 GO:0005524
Acco04g1240 368 FunFam Putative receptor-like serine/threonine-protein kinase 131 344 - -
Acco04g1240 368 PANTHER OS08G0249100 PROTEIN 28 349 IPR046958 -
Acco04g1240 368 SUPERFAMILY Protein kinase-like (PK-like) 34 321 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1240 Acco-ChrAcco04 12551911 12556129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1240 39 339 Receptor kinase-like Gene Family AT1G60800 43.226 4.46e-74 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Acco04g1240 PK_Tyr_Ser-Thr 1.8e-39 CL0016