Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1173 ATGGCAATTGCAGCTTCAACCTCATCCTCCACCATGAGGATCAGCCATAGCCACAACAACAATAGCCTCGTCGTCGACGACCACGAGAGGAAGCAGCCGCCACCGGCAGCAGAAACAGACGACGACGGTCACGAGCACGACGTGGTCATGCCAGGGTTTCGGTTCCACCCAACAGAAGAAGAACTGGTAGAGTTCTACCTTCGCCGTAAGGTGGAGGGCAAGCCTTTCAATGTTGAGATCATTACTTTCCTTGATCTTTATCGATATGACCCTTGGGAGCTTCCCGGTTTGGCAGCTATAGGGGAGAATGAATGGTACTTTTATGTGCCGAGAGATAGGAAGTATCGGAACGGCGACCGGCCGAACCGGGTAACGACTTCAGGGTATTGGAAGGCCACCGGAGCTGATAGAATGATCAAAACAGATGGCTTCAGATCCATCGGACTCAAGAAAACCCTAGTCTTTTACTCCGGTAAAGCTCCTAAAGGGATTAGAACCAGTTGGATTATGAACGAGTATCGATTGCCTCACCACGAAACCCAACGATTTCAAAAGGGTGAGATATCTCTTTGTCGAGTGTACAAGAGAGCAGGCGTGGAGGACCATCTCTCTCTCCCTCGTTGTCTCCCCATAACATCATCATCAAGGGCTTCACACAATAAGAACAAGCACAACGCTAACCAATTTATGGTTCATCAGAACAGCATCAGATTCCTGGGACAACAACAATCACAGCATCATCATGATCAATATCAAACCACAGAACAAGTTGTCGAAAAAATTAATCATCAAACTGAGGAATACAGTACTACTACAGATGATGCCAACAAGTACAACGACAATCTGCAGCAGCAACAACCAAAGCATGCTCAACAACACACAGAAGTTGCAATAGCAGCTTCCTCCTTCCCCAAAGGCTCTTCTACTTCTAATAATTCATCCTCATTACCATCTAATGACAATATTAATAATAGAGCGATAATGGTGGAAGATGATGATCATCTCAATCGGCTAGCAGTGAGTTATAATCAGCAGTTACAGCACTTCAATAACATTTATGCTTCTGCTGCTTCTTCTCAAGCTCATCAGCAATATAATTATCAGCCCCACTTGATGATGCAGTTCTCTAATAATATTGTGTTGCAGCCACAACAATCATCAATGCCCCTTCATAATTCGATTCCCATTAACTCTTTCTCTGACAGATTGTGGGAGTGGAATCCAATCCCTGAGCCAACAAACCGAGACTTCACCACCATGTCCTTCAAGTAA 1272 0.4513 MAIAASTSSSTMRISHSHNNNSLVVDDHERKQPPPAAETDDDGHEHDVVMPGFRFHPTEEELVEFYLRRKVEGKPFNVEIITFLDLYRYDPWELPGLAAIGENEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIKTDGFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPHHETQRFQKGEISLCRVYKRAGVEDHLSLPRCLPITSSSRASHNKNKHNANQFMVHQNSIRFLGQQQSQHHHDQYQTTEQVVEKINHQTEEYSTTTDDANKYNDNLQQQQPKHAQQHTEVAIAASSFPKGSSTSNNSSSLPSNDNINNRAIMVEDDDHLNRLAVSYNQQLQHFNNIYASAASSQAHQQYNYQPHLMMQFSNNIVLQPQQSSMPLHNSIPINSFSDRLWEWNPIPEPTNRDFTTMSFK 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1173 423 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 46 301 - -
Acco04g1173 423 MobiDBLite consensus disorder prediction 1 21 - -
Acco04g1173 423 SUPERFAMILY NAC domain 48 195 IPR036093 GO:0003677|GO:0006355
Acco04g1173 423 ProSiteProfiles NAC domain profile. 49 196 IPR003441 GO:0003677|GO:0006355
Acco04g1173 423 MobiDBLite consensus disorder prediction 22 49 - -
Acco04g1173 423 MobiDBLite consensus disorder prediction 1 49 - -
Acco04g1173 423 FunFam NAC domain-containing protein 35 58 199 - -
Acco04g1173 423 MobiDBLite consensus disorder prediction 266 322 - -
Acco04g1173 423 Pfam No apical meristem (NAM) protein 51 175 IPR003441 GO:0003677|GO:0006355
Acco04g1173 423 Gene3D NAC domain 58 199 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1173 Acco-ChrAcco04 11268057 11270635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1173 1 423 NAC Transcription Factor Family AT2G02450 47.489 3.05e-110 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Acco04g1173 NAM 1.7e-34 No_clan