Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1171 ATGGGAAACTGTCTGGCTCGTCAACCTGATTCTACCAATTCTCCTCGCAACTCCAACAATGGCGCCAACAACAACCAATTGGGGAGCAGCCAACCACCCATTAGACACAGTACTTCAAGACTCTTGCAGAGTACAAGCAATTCCACTTTGCTTGGACGAAGCAGCATGTCTGCAGGAAATAGCAGGCTATTTGGACCAAGTAGCAGTAACACATACACAACCAGCAACACTAATACATCTCTTTTAGGCTCTGATAGCAGCCAGATTTTGAAAGTAAGAGGTGAAGAGGATGAGTTTCCTAATGGGCAGATCTTGGATGTGGCAAATTTGAGAGAATTCACTTTTGAGGAACTGAAGGCAGCAACTAAAAATTTCAGAGCTGAATCTGTAGTAGGAGAGGGAGGCTTTGGCAGAGTCTACAAGGGTTTGCTTGAAGGGAAAGCATCATCAGCAGCTAAAAGAGATGGGCGATTGGCCGTCGCAATCAAGAGATTGAACTCTGATAGCAGACAAGGAGTTATGGAATGGCAGTCAGAGGTGAATTTCTTAGGAAGGCTTTCTCATCCTAACCTTGTCAAGTTGTTTGGAATTGGAAGGGAAAATGGAGAGCTGTTTCTGGTGTATGAATTCATGCACAAAGGCAACTTGGCTAACCACCTATTTGGAAGAGGTTCAAATGTACGGCCACTTCCATGGGACACAAGGTTAAAGATTATAATTGGAGCAGCTAGGGGCCTAGAGTTCTTACACTCATTAGAGAATAGAATCATATACAGAGATTTTAAGCCAGCCAATATCCTACTTGACAAGAACTACAATGTCAAGTTATCAGACTTTGGTTTGGCCAAAGCGATTCCTTCTGGTGATAGAACTCATGTGACAACAAGGGTTATGGGAACTTACGGTTATGCTGCGCCTGAGTACGTTGTCACAGGTCACTTGACTGTGAAGAGTGATGTGTACGGGTTTGGAATTGTTTTGGTGGAGATACTGACAGGCAAAGCAATACTTGATATAAATAAGCATCTGGGTCAGGGCCAATCATTGATGGATTGGCTCAAATCAAATCTATTGAGTAAAGGGAAGATGATAAACACAATGGACAGAAGATTGGACGGGAGATATCCACCAAGGTTAGCATTACAAGTAGCTCAGCTGGCTCTTAAATGTGTCCAAACGGAACATAAATTTAGGCCATCAATGAGGGAAGTTGTCGAGACATTAGAAAAAATAGAGGCAGCTCAACTTAATGGTCGCCCAAATGGAGGTTGA 1272 0.4324 MGNCLARQPDSTNSPRNSNNGANNNQLGSSQPPIRHSTSRLLQSTSNSTLLGRSSMSAGNSRLFGPSSSNTYTTSNTNTSLLGSDSSQILKVRGEEDEFPNGQILDVANLREFTFEELKAATKNFRAESVVGEGGFGRVYKGLLEGKASSAAKRDGRLAVAIKRLNSDSRQGVMEWQSEVNFLGRLSHPNLVKLFGIGRENGELFLVYEFMHKGNLANHLFGRGSNVRPLPWDTRLKIIIGAARGLEFLHSLENRIIYRDFKPANILLDKNYNVKLSDFGLAKAIPSGDRTHVTTRVMGTYGYAAPEYVVTGHLTVKSDVYGFGIVLVEILTGKAILDINKHLGQGQSLMDWLKSNLLSKGKMINTMDRRLDGRYPPRLALQVAQLALKCVQTEHKFRPSMREVVETLEKIEAAQLNGRPNGG 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1171 423 CDD STKc_IRAK 131 411 - -
Acco04g1171 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Acco04g1171 423 FunFam Serine/threonine-protein kinase BIK1 93 210 - -
Acco04g1171 423 Gene3D Transferase(Phosphotransferase) domain 1 211 419 - -
Acco04g1171 423 Pfam Protein tyrosine and serine/threonine kinase 128 408 IPR001245 GO:0004672|GO:0006468
Acco04g1171 423 PANTHER OS01G0588500 PROTEIN-RELATED 64 412 - -
Acco04g1171 423 ProSitePatterns Protein kinases ATP-binding region signature. 131 163 IPR017441 GO:0005524
Acco04g1171 423 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 211 420 - -
Acco04g1171 423 ProSiteProfiles Protein kinase domain profile. 125 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g1171 423 Gene3D Phosphorylase Kinase; domain 1 109 210 - -
Acco04g1171 423 SUPERFAMILY Protein kinase-like (PK-like) 110 407 IPR011009 -
Acco04g1171 423 MobiDBLite consensus disorder prediction 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1171 Acco-ChrAcco04 11253752 11255878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1171 102 412 Receptor kinase-like Gene Family AT4G02010 45.860 2.97e-86 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Acco04g1171 PK_Tyr_Ser-Thr 7.5e-47 CL0016