Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1151 ATGACGGATCAGACCGAGTTCAGTGTTCTATGCAGTTTCTTCACATGGACACAGAGAAGCAAGTCACCCGCCCAGAAGCGCTCCAAGTTCCGCAAGTTCCTCGATACCTTCTGCAAAGACAGAAATTACTTCAGTGCAATTCGGTTGATTCTTCCCAATCTCGACCGGGAGCGAGGGTCATATGGGCTCAAGGAGTCGGTTCTCGCTACCTCCCTCACTGACGTTCTCGGGATGTCCAAGGAGTCCGAGGACGCTCTACGCCTCATCAATTGGCGCAAAGGTGGTGCGAAGACTGGTGCCAATGCCGGAAATTTTGCTCTTGTCGCTGCTGAGGTGCTGCAGCGTAGGCAAGGGTTGGCATCTGGTAGATTGACAATAAGGGAATTAAATGAGTTTCTTGATAAACTAGCTTCAAGTGAGAACAGGGCTGAGAAGACTTCAGTTCTTTCTACCCTTATTCAAAAGACAAATGCACAAGAAATGAAGTGGATTATCATGATAATACTCAAAGATCTAAAGCTTGGAATTAGTGAAAAGAGCATTTTCCATGAATTGCATCCAGATGCTGAAGACTTGTTTAATGTAACTTGTGACTTGAAATTAGTTTGTGAAAAGCTAAAGGATCGGAGTCAACGTCATAAGAGACAGGATATTGAAGTTGGAAAAGCTGTACGTCCTCAACTAGCAAAGAGAGTTGGTAGTGCTAGTGAAGCGTGGAAAAAGCTTCATGGGAAGGAAGTTGTTGTCGAGTGCAAGTTTGATGGAACTTTCTTGACCATTCAGAATATCAACATGGAATATCAGACATCATATTACAAAATATTCTTGTTGACAGGTTTCCATTACACATCAAGAAGGCATTCCAGGAATGTGCATGTTGTCTCAGTTTCTGTTCTGGGAAGCTCATCCACTGTTCTTGTATTTTTCCCTCCTAAAAGAGAGTATAAAAGAACAAGAGAAACAGTTCACATTATGCCTATCACTCAAATGTGTATTCTTGATGGTGAAATGTTGGTTTGGGATAAATCATTGAACCGTTTTGCTGAATTTGGTTCAAATCAGGAAATCGCTAAGGCAGCAAGGGACGGGCTTGATAGTGATAGACAGTTGTGTTGTATCCTTGAACTAGATGGGTTCACAACCATTGAATTCAGTTTTCAAGGGCTTTCTTACGTTGCGTTTGATATCCTTTATGTTGGAGATACAAGTGTAATACACCAGACTTTGAAGGAAAGACACGAGCTTCTCTGTAAAGTTGTTAGGCCCTTAAAGGGTAGTTTGGAAATTTTAATACCTAATGGTGGCCTCAACTCTAATTGTCCATCTGGGGAACCTTCTTGGTCATTTATTGCGCATAATGTGGATGAAGTTGAGAGATTTTTCAAAGAAACTATTGAGAATAGCATGGCAGGAAGAGATGAGGGCATTGTTCTGAAAGATCTTGGTTCCAAATGGGAACCCAGCGACCGTAATGGAAAGTGGATGAAATTGAAGCCAGAGTATATACATGCTGGTTCTGATCTGGATGCCCTTATAATAGGTGGCTATTATGGCTCTGGACGAAGAGGAGGGGAGGTTGCTCAATTCTTGGTAGGCCTAGCAGAGCGTCTCTCCCCCGTTGCACATCCCAAGCGATTTATCTCATTTTGTAGAGTTGGTACTGGACTTTCTGATGATGAGCTTGATGCCCTAGTAACCAAACTGAAACCATATTTCAGGAAGTATGAATACCCAAAGAAGAGGCCACCGAGTTTTTATCAAGTCACTAACCATTCAAAAGAGCGGCCTGATGTGTGGATTGAGAGCCCTGACAAATCAATAGTTCTCTCTATAACCAGTGACATTCGAACTGTAGAATCTGAGGTATTTGCTGCACCTTACAGTCTGAGATTTCCTCGGATTGACAGGGTGAGATATGACAAACCCTGGTATGAATGTCTTGATGTGCAATCATTTATAGAACTCGTGCATTCTAGCAATGGCACCACAAAGGCAAGCACAGAGTATGGTGGCATGCAGGATAGTAAATCAAAACGCATGAAATCCTCTAAAAGGGAAGGGAAAAAAAACATGTCCGTTGTCCCTTCTCATTTAGTTCAGACTGATGTTTCCAATGTCAAAGGGGGCTCCTTAATATTTTCGAATATGATGTTTTATTTCGTCAATGTGCCTCCATCCCATTCTCTTGATTCCTTGCATAAGATGATTGTTGAGAATGGGGGCACTTTCTCAATGAACTTGAACAATTCAGTCACCCATTGTGTTGCAGCAGATAGCAAGGGTTTTAAATTTGAAGCTGCAAAACGTCATGGTGATATCATTCATTTTAGTTGGGTAATAGATTGCTGTGCGCAAAAGAAGCTTATTCCCTTACAGCCAAAGTATTTCCTTTTCATTTCTGAGCCCACAAAGAAGAAGTTATCTGAAGAAATTGATGAGTTCTCAGACTCATACTACTTGAATCTTGATTGTGCGGACATCAAGCAGCTCTTAAGCAATATTCCCAGATCAAAAAAAGATGTCAGCACAATCGACTATTACAGGAGAAAGTACTGCCCAAAGGATAAGTGGTCTCACTTTCAAGGATGCTGCATTTATTTCCACACTTTTTTACCGCCTTCGAAAGGAGATTGGGAAGTTCTGTTGGGACTTTCACTGAGGAGATTGCGGTCTGAAATTCTCATGAGTGGTGGCAAAGTTACTGGTAGTCCCACTTCTGCTACCCACTTTGTGGCCTTGTCAGTTCCAGGATATAATGTGGACTTTAAAGAAATGTTAACGAGTTTCTCTTCTGTCGAAGGAAAATTTCTTTTGAGCAAGCGGTTGCATGTTGTTGGATCTCAGTGGCTTGAAGATTGTTTAGAACACGGCCGAAGATTACCAGAACAAACATATACATTGAAGCCCAGCGGAGTAGAAGAACTAGCTACTGAAGAGTGCAAACATGATTTGGCTTTAGAGGGTCATTGTGGTGGTAGACATAATGTGGAAGACCAAAAATCGTCACTTGTCCCTGAAAAGGGAAGTCAGCTGAGAAGTGCAAAACCTGTTGTTGAAAGTTTGGTGTCCCTGGAGAGGAGTGGCAAAAGGAAACGGGGAAGATCTGCAGGCAGAGGCAGTAAAATGGTTAAAACAGCCGGCAACCAAACTCGTCGATCACGAACGCGTATTGGAAAAAGGCCTGCAAAAATATGTGAATATGAAACAGATGAAAGTGGTTCTCATGATGAAAAACCATGTGAAGGTGAGATTGACTCAAGAGAATTCAGTCCTGACTCTCATAATGGCACAGAAGTCACCAAGATTGTGACTTTACAAAATCCGGAGCCATCAAAACGAGATGGTGCAGTTAAGCAAGAGTTTTTTAAGGATGTTGAACACGAAGAACATTCTGTTCCTGAAATTGAAATGACCGAACAGCATGAGGACCAAAACAGTAGGACTGAACAACTGGATGTTATGGCTGATCCGATACAGGCAATGCTTTTTAACATGTTTCCCAGCCTTGCGACAAAGAAAGTTGCTGAAACAAAGAATGATGACGTTAATGATAAGCCACCTGAAGAATTCAAAGGTAATGTTAAAGATGACAAGCTACCTGAGCAATTCAATGCTAATGTTAAAGATGGTAAGCCACCTGAACAATCCAAATCCACTGCTGAGCCTGCAAGGAAAAAGAAAGTTAGCTATAAGGATGTTGCTAATAAGCTGCTCGAGGATTGGTAG 3726 0.4192 MTDQTEFSVLCSFFTWTQRSKSPAQKRSKFRKFLDTFCKDRNYFSAIRLILPNLDRERGSYGLKESVLATSLTDVLGMSKESEDALRLINWRKGGAKTGANAGNFALVAAEVLQRRQGLASGRLTIRELNEFLDKLASSENRAEKTSVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHELHPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEVGKAVRPQLAKRVGSASEAWKKLHGKEVVVECKFDGTFLTIQNINMEYQTSYYKIFLLTGFHYTSRRHSRNVHVVSVSVLGSSSTVLVFFPPKREYKRTRETVHIMPITQMCILDGEMLVWDKSLNRFAEFGSNQEIAKAARDGLDSDRQLCCILELDGFTTIEFSFQGLSYVAFDILYVGDTSVIHQTLKERHELLCKVVRPLKGSLEILIPNGGLNSNCPSGEPSWSFIAHNVDEVERFFKETIENSMAGRDEGIVLKDLGSKWEPSDRNGKWMKLKPEYIHAGSDLDALIIGGYYGSGRRGGEVAQFLVGLAERLSPVAHPKRFISFCRVGTGLSDDELDALVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWIESPDKSIVLSITSDIRTVESEVFAAPYSLRFPRIDRVRYDKPWYECLDVQSFIELVHSSNGTTKASTEYGGMQDSKSKRMKSSKREGKKNMSVVPSHLVQTDVSNVKGGSLIFSNMMFYFVNVPPSHSLDSLHKMIVENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHFSWVIDCCAQKKLIPLQPKYFLFISEPTKKKLSEEIDEFSDSYYLNLDCADIKQLLSNIPRSKKDVSTIDYYRRKYCPKDKWSHFQGCCIYFHTFLPPSKGDWEVLLGLSLRRLRSEILMSGGKVTGSPTSATHFVALSVPGYNVDFKEMLTSFSSVEGKFLLSKRLHVVGSQWLEDCLEHGRRLPEQTYTLKPSGVEELATEECKHDLALEGHCGGRHNVEDQKSSLVPEKGSQLRSAKPVVESLVSLERSGKRKRGRSAGRGSKMVKTAGNQTRRSRTRIGKRPAKICEYETDESGSHDEKPCEGEIDSREFSPDSHNGTEVTKIVTLQNPEPSKRDGAVKQEFFKDVEHEEHSVPEIEMTEQHEDQNSRTEQLDVMADPIQAMLFNMFPSLATKKVAETKNDDVNDKPPEEFKGNVKDDKLPEQFNANVKDGKPPEQSKSTAEPARKKKVSYKDVANKLLEDW 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1151 1241 Gene3D - 502 662 IPR012340 -
Acco04g1151 1241 FunFam DNA ligase 501 662 - -
Acco04g1151 1241 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 4 205 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Acco04g1151 1241 SUPERFAMILY BRCT domain 712 799 IPR036420 -
Acco04g1151 1241 Gene3D BRCT domain 723 836 IPR036420 -
Acco04g1151 1241 Pfam DNA ligase N terminus 6 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Acco04g1151 1241 MobiDBLite consensus disorder prediction 1214 1229 - -
Acco04g1151 1241 Pfam BRCT domain, a BRCA1 C-terminus domain 710 793 IPR001357 -
Acco04g1151 1241 NCBIfam ATP-dependent DNA ligase 61 655 IPR000977 GO:0003910|GO:0005524|GO:0071897
Acco04g1151 1241 ProSiteProfiles BRCT domain profile. 860 967 IPR001357 -
Acco04g1151 1241 SUPERFAMILY BRCT domain 848 969 IPR036420 -
Acco04g1151 1241 SUPERFAMILY Nucleic acid-binding proteins 506 657 IPR012340 -
Acco04g1151 1241 MobiDBLite consensus disorder prediction 1176 1204 - -
Acco04g1151 1241 FunFam DNA ligase 723 837 - -
Acco04g1151 1241 CDD BRCT_DNA_ligase_IV_rpt1 712 798 - -
Acco04g1151 1241 ProSitePatterns ATP-dependent DNA ligase signature 2. 474 498 IPR016059 GO:0003909
Acco04g1151 1241 Gene3D BRCT domain 856 967 IPR036420 -
Acco04g1151 1241 SMART BRCT_7 871 957 IPR001357 -
Acco04g1151 1241 SMART BRCT_7 710 786 IPR001357 -
Acco04g1151 1241 ProSiteProfiles BRCT domain profile. 708 796 IPR001357 -
Acco04g1151 1241 MobiDBLite consensus disorder prediction 674 691 - -
Acco04g1151 1241 MobiDBLite consensus disorder prediction 663 691 - -
Acco04g1151 1241 ProSiteProfiles ATP-dependent DNA ligase family profile. 391 535 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Acco04g1151 1241 PANTHER DNA LIGASE 4 3 1235 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Acco04g1151 1241 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Acco04g1151 1241 MobiDBLite consensus disorder prediction 1176 1229 - -
Acco04g1151 1241 FunFam DNA ligase 1 218 - -
Acco04g1151 1241 CDD Adenylation_DNA_ligase_IV 214 502 IPR044125 GO:0005524
Acco04g1151 1241 MobiDBLite consensus disorder prediction 996 1098 - -
Acco04g1151 1241 Pfam ATP dependent DNA ligase domain 226 498 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Acco04g1151 1241 MobiDBLite consensus disorder prediction 1059 1094 - -
Acco04g1151 1241 Pfam ATP dependent DNA ligase C terminal region 522 641 IPR012309 GO:0003910|GO:0006281|GO:0006310
Acco04g1151 1241 Gene3D DNA ligase/mRNA capping enzyme 220 500 - -
Acco04g1151 1241 CDD OBF_DNA_ligase_IV 505 649 - -
Acco04g1151 1241 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 499 - -
Acco04g1151 1241 MobiDBLite consensus disorder prediction 1128 1148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1151 Acco-ChrAcco04 10898684 10910492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1151 214 658 Core DNA Replication Machinery Family AT1G08130 23.956 1.84e-20 95.9