Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1138 ATGACGACGACCATGACAGCGACAGAGGGACAAACCTCCAAGGTCAGGAGGACCAAGATTGCACCATGCTTGACTTGTCCTTTGTGTAATGATTTCTACAGAGAAGCCACCACTATTTCAGAATGCTTGCACACTTTTTGCAAGGAATGCATATGGCAGAAGTTCAGAGCTGAGTATGAGACGCATTGTCCAGTATGTGATATAGACCTTGGTACTTATCCACTTGAGAGGACAAGGCCAGACCCTAGTCTGCAAGAATTGAGGGATAAAATTTTCCCTCATGAGGAAAAAAGTGCTAAGGCACCTGATAGTGTGGCTTCCGATACCAAGAAAAAGGAGAGGTCTGCCTCTTCATTAGGCACCAGTCCAAAACCTAAGCTATCAAGCCATTCTTCTTTAGTTGAAAGAAGGGCGAAAACCGCAGCGAAAAAATTTTTGGATGAACAAGAATCTGCTCTTGCTGCCTTTCAATTGGAGAAAAAATCAACTGGTAAGAAACATGGGAGACCGAATGGGGTAGCAATTTTGGAAGGCTCTGCTAAAAATTCATCAAGAACAAAATCTGTAGCGAGGGAAAAAACCATTCCACAAGAATACATCGCCTCTACTAGTCAACCTCAGCCTCAGAAAGTAGCCGGAGATAACAAGACAAACCAGGAACACAGTCCTATTCCAAAAGAATACATTCCCTATGCTAGTCAACCTCAGCCTCAGAAAGTAGCAGGAGATAAGACAGACAAGGAACACAGTCCTATTCCAAAAGAATACAGTCCCTCTGCTAGTCAACCTCAGCCTCAGAAGGTGGCAGGAGATAACAAGACAGACAAGGAACACAGTGAGCTTGAAACTGAAAATGCGACAAGTGAAATTGAGAATCAGAAGACTTCCTTAGAACCAGATTTGAACCAGCAAGAAGTGCCTAATGAAACTTCTGAGAAAAATGCTGTGTTATGGAAAGGAAAAGCTCCCATGTGGGAGCCCTTGAACTGCCTCATGGAAGCTGCGGAAAATGCAAAGTCTTCGGAGTCCAACAATATGCAAGAAAATGCCAATTTTGCAGTACCGGTTGAATCTTGCAACAATGACTCCAATACCACCAAAATTATGGCAGCCATTCATCGAAATGAGGCAACCAAAATTATGGCAGCTAGTGATCAAAATGAGGCAACTCCGGTTCCACCAGATCCCATCAAAACTAAGGGGTTGGGGATCAAACATCAAAGAAGAGTCAAACTTGCTCAAGACTTGAATGTTCCTGCGGAACCTGTACCTATGGGTCCAAGCAGCCAAAGCAATGAAAGAATAATTCCAATATGGTTCTCATTAGTTGCTTCTGAAGAGGGGGATGTACGGGCACACTTGCCACAGTTGCCTTACCCCTACCTGAGGGTCAGGTTGCATTCAAATGTTGATTCTTGCCTTGTTTCCAATTCTTTATTTTTTGTGAAAGACATACAGATCTTATTTTTCTTTAGGGATGTCAATTTACCAATTGCATTCATCAAGAAGTATATAGTGAAGAAGCTTGATCTTGAAAGCGAAGCAGAGGTGGAAATCTCATTAAGTGGGAAGCCATTGTTGCCTTCACTGCAACTGAAGGACGTAGTAGAGATGTGGTTAAAGACAGTGCCAAAGTCTGATGAGATGATTCATTCCTTTGTTGGGGACACGGCAAAGGATTATATGATGGTTCTTTCGTATAGTCGAAAGGCTTAG 1716 0.4289 MTTTMTATEGQTSKVRRTKIAPCLTCPLCNDFYREATTISECLHTFCKECIWQKFRAEYETHCPVCDIDLGTYPLERTRPDPSLQELRDKIFPHEEKSAKAPDSVASDTKKKERSASSLGTSPKPKLSSHSSLVERRAKTAAKKFLDEQESALAAFQLEKKSTGKKHGRPNGVAILEGSAKNSSRTKSVAREKTIPQEYIASTSQPQPQKVAGDNKTNQEHSPIPKEYIPYASQPQPQKVAGDKTDKEHSPIPKEYSPSASQPQPQKVAGDNKTDKEHSELETENATSEIENQKTSLEPDLNQQEVPNETSEKNAVLWKGKAPMWEPLNCLMEAAENAKSSESNNMQENANFAVPVESCNNDSNTTKIMAAIHRNEATKIMAASDQNEATPVPPDPIKTKGLGIKHQRRVKLAQDLNVPAEPVPMGPSSQSNERIIPIWFSLVASEEGDVRAHLPQLPYPYLRVRLHSNVDSCLVSNSLFFVKDIQILFFFRDVNLPIAFIKKYIVKKLDLESEAEVEISLSGKPLLPSLQLKDVVEMWLKTVPKSDEMIHSFVGDTAKDYMMVLSYSRKA 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1138 571 Pfam Zinc finger, C3HC4 type (RING finger) 26 66 - -
Acco04g1138 571 CDD RING-HC_PCGF 24 67 - -
Acco04g1138 571 MobiDBLite consensus disorder prediction 92 135 - -
Acco04g1138 571 MobiDBLite consensus disorder prediction 288 311 - -
Acco04g1138 571 MobiDBLite consensus disorder prediction 270 287 - -
Acco04g1138 571 MobiDBLite consensus disorder prediction 92 117 - -
Acco04g1138 571 SUPERFAMILY RING/U-box 22 76 - -
Acco04g1138 571 SMART ring_2 26 66 IPR001841 -
Acco04g1138 571 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 242 570 IPR044807 GO:0004842
Acco04g1138 571 MobiDBLite consensus disorder prediction 197 219 - -
Acco04g1138 571 MobiDBLite consensus disorder prediction 385 404 - -
Acco04g1138 571 ProSiteProfiles Zinc finger RING-type profile. 26 67 IPR001841 -
Acco04g1138 571 MobiDBLite consensus disorder prediction 161 313 - -
Acco04g1138 571 ProSitePatterns Zinc finger RING-type signature. 42 51 IPR017907 -
Acco04g1138 571 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 118 IPR013083 -
Acco04g1138 571 MobiDBLite consensus disorder prediction 255 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1138 Acco-ChrAcco04 10746651 10750672 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1138 318 465 C3H Transcription Factor Family AT2G30580 27.703 2.02e-06 48.1