LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco04g1114	ATGTTTCCATCTTCAAAAGCTTTGTTGATCTCTGACTCGCCACCATTACTGAAAGTACCTAACTCGTTCCATCAGAAATCCAAAATCATGAAGAAAGGAAACTTGGGCCTCAACCTCAAGCTCAATGTTCCTGCTTCTGATCAGGTTTCCTTCGCCAAGTTTCTGACTGAGAGCGGGACGTTTAAGGATGGAGATCTGCTTGTCAATCGGGATGGAGTTCGAATTGTAACGGAGACTGAAGTTGAAGCGGCACCCCCCATCACACCACTAGACAACCAGTTAAGTTTGTCAGACATAGACATAATCAAAGTGGTTGGCAAGGGAAATGGGGGCATAGTGCAACTGGTGCAACACAAATGGACCAATCAGTTTTTTGCACTAAAGGTTATCCAAATGAATATTGAGGAGTCGATGCGAAAGCAAATAGCACAAGAGCTTAAAATAAATCAGTCAGCTCAATGTCCATATGTTGTTATTTGCTATCAGTCATTCTATGATAATGGTGCCATATCAATCATCTTAGAGTACATGGATGGAGGTTCTTTAGCAGATCTTCTGAAGAAAGTTAAAAAAATTCCAGAAAAATATCTTGCTGCTATCTGTAAGCAGGTGCTTAGGGGTTTGATATATCTTCACCATGAAAAACATATTATCCACAGGGACTTAAAACCTTCTAATCTGTTGATAAACCACCGAGGGGAGGTAAAGATTACTGACTTTGGTGTGAGTGTAATAATGCAAACTACATCTGGCCAAGCAAATACTTTCATCGGCACATACAACTATATGTCTCCAGAGAGAATCAATGGAAGCCAGAATGGCTACAACTACAAAAGTGATATATGGAGTTTGGGACTGATATTGCTTGAATGTGCTACTGGGCTGTTTCCATATACACCTCCAGATCAGGGTGAAAGATGGGAAAGTATTTTTGAGCTAATTGAAACAGTTGTTGATAAACCTCCTCCCTTTGCTCCATCTGATCAATTTTCTCAGGAATTTTGCTCGTTTATCTCTGCATGTCTACAGAAAGATCCAAAAGACAGACTGTCAGCTCAGGATCTTATGGGACATCCTTTCCTCAACATGTATGGGGACTCGGATGTAGATCTTTCGGAATATTTCAAGAATGCTGGATCCCCTCTTGCGACTGTGCCGACTTCTACTTGATCATAG	1176	0.4099	MFPSSKALLISDSPPLLKVPNSFHQKSKIMKKGNLGLNLKLNVPASDQVSFAKFLTESGTFKDGDLLVNRDGVRIVTETEVEAAPPITPLDNQLSLSDIDIIKVVGKGNGGIVQLVQHKWTNQFFALKVIQMNIEESMRKQIAQELKINQSAQCPYVVICYQSFYDNGAISIILEYMDGGSLADLLKKVKKIPEKYLAAICKQVLRGLIYLHHEKHIIHRDLKPSNLLINHRGEVKITDFGVSVIMQTTSGQANTFIGTYNYMSPERINGSQNGYNYKSDIWSLGLILLECATGLFPYTPPDQGERWESIFELIETVVDKPPPFAPSDQFSQEFCSFISACLQKDPKDRLSAQDLMGHPFLNMYGDSDVDLSEYFKNAGSPLATVPTSTXS	391

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco04g1114	391	Gene3D	Transferase(Phosphotransferase) domain 1	179	383	-	-
	Acco04g1114	391	Pfam	Protein kinase domain	101	361	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco04g1114	391	FunFam	Mitogen-activated protein kinase kinase 6	180	380	-	-
	Acco04g1114	391	SMART	serkin_6	99	361	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco04g1114	391	Gene3D	Phosphorylase Kinase; domain 1	77	178	-	-
	Acco04g1114	391	ProSitePatterns	Protein kinases ATP-binding region signature.	105	128	IPR017441	GO:0005524
	Acco04g1114	391	SUPERFAMILY	Protein kinase-like (PK-like)	94	366	IPR011009	-
	Acco04g1114	391	FunFam	Mitogen-activated protein kinase kinase 6	69	178	-	-
	Acco04g1114	391	PANTHER	MITOGEN-ACTIVATED KINASE KINASE KINASE	42	378	-	-
	Acco04g1114	391	ProSiteProfiles	Protein kinase domain profile.	99	361	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco04g1114	391	CDD	PKc_MAPKK_plant_like	97	364	-	-
	Acco04g1114	391	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	217	229	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco04g1114	Acco-ChrAcco04	10435372	10445916	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco04g1114	30	356	MAP Kinase Kinase Gene Family	AT4G29810	68.750	6.00e-173	484

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Acco04g1114		Pkinase	4.5e-70	CL0016