Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1109 ATGGCTGACGTCCAAATCCCCTTAACACTCTCATCACCACCACCTCCTCCGCCGTCTTCTTCCCAGAAATCCGGCTTGACCATGCTGTACTACAGCCTGGCGGTGGTTGGCACGGCGGCCATAGTGTTAGCCATTTATAACCTCATCATCATCAGGCGGTGCAGCCGCAGCCGCCGACACGGGCCAGGGGCGGGGGACAACCAACCAGTGGAGGTGGTGATCGGGGCGGCCGGTAGTAGTAGCCGGAGCTTTGAATGCTCAAATAGGAACCTGCTTTCAAGCTTCAGGTATAAGAAAGAAGTAGAAGAGAAAGAGGAGTATGAATGCCCAGTTTGCTTATCAGTGTTTGAAGATGGTGAAGAAGTGAGGAAGCTACCTGGCTGTAATCATTCGTTTCATGTGATTTGTATAGACATGTGGCTCTATTCTCACTTGGATTGCCCTGTTTGTCGAACACCTGTTGGATTAACAGAGTGA 477 0.5115 MADVQIPLTLSSPPPPPPSSSQKSGLTMLYYSLAVVGTAAIVLAIYNLIIIRRCSRSRRHGPGAGDNQPVEVVIGAAGSSSRSFECSNRNLLSSFRYKKEVEEKEEYECPVCLSVFEDGEEVRKLPGCNHSFHVICIDMWLYSHLDCPVCRTPVGLTE 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1109 158 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 15 155 - -
Acco04g1109 158 MobiDBLite consensus disorder prediction 1 22 - -
Acco04g1109 158 Pfam Ring finger domain 108 151 IPR001841 -
Acco04g1109 158 CDD RING-H2_EL5-like 109 151 - -
Acco04g1109 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 156 IPR013083 -
Acco04g1109 158 SMART ring_2 109 150 IPR001841 -
Acco04g1109 158 SUPERFAMILY RING/U-box 98 155 - -
Acco04g1109 158 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Acco04g1109 158 FunFam RING-H2 finger protein ATL1 71 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1109 Acco-ChrAcco04 10375501 10375977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1109 11 154 C3H Transcription Factor Family AT2G17450 34.228 3.59e-20 80.9