Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1108 ATGAGCAAGAAGAGAAAGTTCGTTGCCGACGGAGTTTTCTTCGCCGAGCTGAATGAGGTTCTGACTAGAGAGCTAGCTGAAGATGGATACTCCGGTGTCGAGGTTAGAGTTACCCCAATGCGCACTGAGATCATTATCAGAGCCACTCGAACTCAGAACGTCCTTGGAGAGAAGGGAAGGAGAATTAGGGAGCTGACTTCTCTCGTACAGAAGAGATTTAAGTTTCCCGAGAACAGTGTGGAACTGTATGCCGAGAAGGTCAACAACAGAGGTCTTTGCTCTATTGCCCAGGCCGAGTCTCTTCGCTACAAGCTTCTTGGTGGTCTCGCTGTACGGAGGGCTTGCTATGGTGTTCTAAGATTTGTTATGGAAAGTGGTGCTAAGGGATGTGAGGTTATTGTTAGTGGGAAATTGAGGGCTCAGAGAGCTAAGTCCATGAAGTTCAAGGATGGATACATGATTTCTTCGGGCCAGCCAGTCAGGGACTACATTGACTCTGCTGTAAGACATGTACTTCTAAGACAGGGTGTTCTTGGTATAAAGGTCAGGATCATGCTCGATTGGGATCCTAAAGGAAAGCAGGGTCCCAAAACTCCTCTCCCGGACGTTGTCACAATCCATCCTCCAAAGGAGGAGGAAGAATACAGCCGGCCTGTCGCTATTGTGCCAACCAATATTGAGATTCCTGTTGTTGCCTGA 699 0.4821 MSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKFPENSVELYAEKVNNRGLCSIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVRIMLDWDPKGKQGPKTPLPDVVTIHPPKEEEEYSRPVAIVPTNIEIPVVA 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1108 232 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 194 - -
Acco04g1108 232 Pfam Ribosomal protein S3, C-terminal domain 102 184 IPR001351 GO:0003735|GO:0006412
Acco04g1108 232 Gene3D - 89 215 IPR036419 -
Acco04g1108 232 CDD KH-II_40S_S3 1 91 - -
Acco04g1108 232 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 6 94 IPR009019 GO:0003723
Acco04g1108 232 Gene3D - 1 88 IPR015946 -
Acco04g1108 232 NCBIfam 30S ribosomal protein S3 4 206 IPR005703 GO:0003735|GO:0006412|GO:0015935
Acco04g1108 232 ProSitePatterns Ribosomal protein S3 signature. 143 179 IPR018280 -
Acco04g1108 232 Pfam KH domain 16 89 IPR004044 GO:0003723
Acco04g1108 232 FunFam 40S ribosomal protein S3 89 223 - -
Acco04g1108 232 ProSiteProfiles Type-2 KH domain profile. 17 88 IPR004044 GO:0003723
Acco04g1108 232 SUPERFAMILY Ribosomal protein S3 C-terminal domain 89 187 IPR036419 -
Acco04g1108 232 FunFam 40S ribosomal protein S3 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1108 Acco-ChrAcco04 10366678 10368594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1108 1 229 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 86.463 2.32e-148 411