Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1101 ATGGGAAGAAGCCCTTGTTGCTCCAAGGAGGGCTTGAACAGAGGAGCTTGGACTGCTCTTGAAGACAAGATCCTCAAAGACTTCATCGCCGTCCACGGCGAAGGCCGCTGGCGCAGCCTCCCCAAAAGAGCTGGTTTGAAAAGATGTGGGAAAAGTTGCAGACTCCGATGGCTCAACTATCTCAGACCTGACATCAAAAGAGGCAATATCACCCCTGACGAAGAAGAGCTTATCGTCCGCCTTCACAAACTCTTGGGAAACAGATGGTCTTTGATTGCTGGGAGGCTTCCAGGGCGAACAGACAATGAAATAAAGAACTACTGGAACACTAATTTAGGCAAGAAAGTGAAGAACCATCATCATAATCGTCATCATCACCAAAACAACAATGTTACTTCCTCTGCTCAACCTAAGACCGACAAAGCTTTCAATAGTAATAATAATAATCCTGTGAATCTCATCTCCCAGCCTTCGCCACATTCTCTCTTCAATGTTGTCCGTACAAAAGCCACCAAGTGCTCTAAGTTCGTCATCACCCCACGTCCTCCTCCTCCTCTTCCTTCTTCCAGACTACTCTTGCAGATGACCGACTCTGAAACAGAGCCGCTTAATCATCCTGTGAAAGATGTTGCCGCGGCGGCTGCCTATTACCAGACGATGGGTTTACTCGATGGCGCCGATGATAAGAGCTCGTCGAGGTTGTTGGGTGTGGGGAAGGATCGTTATCAGGAGCCGTCGTCGTCGATGATTGCGGCGGATTTCAACGTGGGAGAAATCTGCTTGTCGGACTTTCTGAACTCGGATTTCTCAGAAATGTGCAACTTTAGTAACGAGAACAGCGTCGACGGCCTGTCACCGTCGTCGGACCCTCAATCCTTTGTGATCTCCGATGATGCTCTAAACGATTGGATGCAGAGCAACAACGTGGAAGACACAAATGTGGGCAATAATCTTTCACTCTTTAACATCCTTCCTTGA 978 0.4826 MGRSPCCSKEGLNRGAWTALEDKILKDFIAVHGEGRWRSLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNITPDEEELIVRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKNHHHNRHHHQNNNVTSSAQPKTDKAFNSNNNNPVNLISQPSPHSLFNVVRTKATKCSKFVITPRPPPPLPSSRLLLQMTDSETEPLNHPVKDVAAAAAYYQTMGLLDGADDKSSSRLLGVGKDRYQEPSSSMIAADFNVGEICLSDFLNSDFSEMCNFSNENSVDGLSPSSDPQSFVISDDALNDWMQSNNVEDTNVGNNLSLFNILP 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1101 325 FunFam Transcription factor TT2 70 141 - -
Acco04g1101 325 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 148 - -
Acco04g1101 325 MobiDBLite consensus disorder prediction 128 143 - -
Acco04g1101 325 CDD SANT 16 61 IPR001005 -
Acco04g1101 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Acco04g1101 325 SMART sant 66 114 IPR001005 -
Acco04g1101 325 SMART sant 13 63 IPR001005 -
Acco04g1101 325 MobiDBLite consensus disorder prediction 119 143 - -
Acco04g1101 325 FunFam MYB-related transcription factor 13 66 - -
Acco04g1101 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Acco04g1101 325 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Acco04g1101 325 Gene3D - 71 143 - -
Acco04g1101 325 Gene3D - 14 66 - -
Acco04g1101 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Acco04g1101 325 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Acco04g1101 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Acco04g1101 325 CDD SANT 71 112 IPR001005 -
Acco04g1101 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1101 Acco-ChrAcco04 10211547 10212718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1101 1 136 MYB Transcription Factor Family AT4G09460 65.217 5.15e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco04g1101 Myb_DNA-binding 2.6e-13 CL0123