Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1080 ATGGAACCTCGTGTTGGGAATAAGTTTCGGCTCGGCCGCAAGATCGGCAGCGGTTCCTTTGGCGAGATCTATTTAGGTACTAATATTCAAACTAACGAAGAGGTCGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAGTTGTTGTACGAGTCCAAGCTGTACAGAATTCTCCAGGGAGGAACTGGAATTCCAAATGTTAGATGGTTTGGAGTGGAGGGAGACTACAATGTTCTGGTGATAGATCTCCTTGGACCTAGTCTTGAAGATCTATTTAACTTCTGCAGTAGGAAGCTATCACTGAAGACAGTTCTCATGCTTGCCGATCAAATGATCAACCGAGTTGAGTTTGTTCATTCTAAATCATTTCTACATCGGGACATCAAACCAGATAATTTTCTTATGGGCTTAGGAAGGCGTGCAAACCAGGTTTATGTTATTGACTTTGGTTTGGCTAAGAAATATAGAGATAGTTCAACTCATCAACACATTCCTTACAGGGAAAATAAGAATTTGACTGGAACTGCAAGATACGCTAGCATGAACACTCATCTTGGCATTGAGCAAAGCCGAAGAGATGATCTAGAGTCTCTTGGTTATGTCCTCATGTACTTTTTGAGAGGAAGTCTTCCTTGGCAGGGACTTAAAGCTGGCACCAAGAAACAGAAGTATGAGAGAATCAGTGAAAAGAAGGTTTCCACCTCGATTGAGGCCTTGTGCCGAGGTTATCCAACAGAATTTGCTTCTTATTTCCATTACTGCCGATCATTAAGGTTTGATGATAAGCCAGATTATGCTTACCTGAAAAGGATATTCCGTGACCTCTTTATTCGGGAAGGCTTCCAGTTTGACTACGTCTTTGACTGGACTATCTTGAAGTATCAGCAATCACAGCTGGCTACTCCTCCTGCACGTGCCCTTGGCCCAAGTGCTGGAACTAGTTCTGGAATGCCCCCTGTTGTGGCTAACGCTGATAGACAGACAGGAGGGGATGAAGGACGAACCCCGGGTCTTGTTTCGATGGATTCTATGCGGCGAAAAATGTCAGGCCCCATATTGAATTCTTCTCCAAGTAACCATATTTTGGGCCAGTCAAGTGGGTCATCTCGGCGAGTTGCTGTTCCCAGTAGCCGTGATGCATTTGTTGGTGGGGAGTCAGATCCCCGTACTCGCACTACAGAAGCTAGCCCTGGAGCCGCTCACAGAATTTCAGGTGGGCATCGAAGTTCACCACTGGGAGCTTCAGATGCAAAGAGAATTTCTTCTGGAAGAAATGCTTCTCATGTCAAGAATTATGAATCTGCTGTTAGGGGCATTGAAGGCTTACAATTAGAGAATGATGAGAGGGCCCACTATTAA 1362 0.4464 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVIDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYVIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYERISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPARALGPSAGTSSGMPPVVANADRQTGGDEGRTPGLVSMDSMRRKMSGPILNSSPSNHILGQSSGSSRRVAVPSSRDAFVGGESDPRTRTTEASPGAAHRISGGHRSSPLGASDAKRISSGRNASHVKNYESAVRGIEGLQLENDERAHY 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1080 453 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Acco04g1080 453 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g1080 453 PANTHER CASEIN KINASE-RELATED 9 370 - -
Acco04g1080 453 CDD STKc_CK1_delta_epsilon 8 282 - -
Acco04g1080 453 MobiDBLite consensus disorder prediction 350 374 - -
Acco04g1080 453 FunFam Putative Casein kinase I 1 85 - -
Acco04g1080 453 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g1080 453 Pfam Protein kinase domain 10 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g1080 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Acco04g1080 453 MobiDBLite consensus disorder prediction 304 429 - -
Acco04g1080 453 Gene3D Transferase(Phosphotransferase) domain 1 1 308 - -
Acco04g1080 453 FunFam Casein kinase I isoform delta-like 1 308 - -
Acco04g1080 453 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1080 Acco-ChrAcco04 10013763 10019611 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1080 7 223 EF-hand Containing Proteins AT2G17890 25.778 1.30e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Acco04g1080 Pkinase 4.5e-26 CL0016