Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1076 ATGGATAGCGTCTTCTCCTTCTCGGAAGCCGAAAGACTTGATTTCCTCCAATCCGCACTCAACACTTATGGCTGCGCTTATATCTGCCTCTGGTTCTACTGTCCCTCTTCCAATCGGCTGCTCTTCTTGGATGGTTTGTGCGATGCCGTATCAAACTGTTGGGGTGTTTTTGACCAATATAGGGGCTTGGAATTTGATGTCACTCCTGATAATTATGGCGTTCCGGGACTAGCTTTTCGGAACCACTTGTACACCTGCCTAGAGCTCCAACAATCCGATCTCTTAAGACTCGCATGCACTCCTATCCAAAGACGCTTCTTTCAGACGGCTGTTTTCATAGGTTGCGGCAACGGGGAAATTGAGCTTGGTTTCTCAGTTCTCTCTCAAGCTGCTGATGATATTCATCAAACAGATGTGATGAGGAACTTGTTTACAGAAGAATTTTCTAGGCTGTCCCATCAAGCTCAACTGAAGAATCCATCTTCATGTTCTTTGAGATCGATATTATCCCCAGCAAGCAGTCCCGAATCCACATCCCTCTGGTGCGGTAATATTCCGCCGGCGGCCACTGGTCTCTTGCCTGAAATGCTGCAGCAGAGACAAGATAATGAACACGAGGCCATAGTTAGAGCAATTCTTCTTGTTATATCTTCCCCTTCTTCTTCATCTTCTAATAGATCAACCTTTCATCACCAAAATCTGCCTAATATTATACATCCAGAAGAAGGAACTAGTGCTTTTACGAGGTACAGACCTAATTCAGAAATGAGTTCCAAATTTCCCAGTTTGAGCAAGAACCCCAAACAAAGCTTCCTCAAGAGATCATTCGAATTGCTCAGAGGCTTACATTACATGAGAAATATGAGACAGCGTTATCAATCAATAAGTCATGCCACTAGAGCCCACCTCCTCCACGTCATCTCTGAACGAAGAAGACGAGAGAAGCTAAACCAGAACTTTCAGGCACTTAGGTCACTACTCCCACCAGGAACCAAGAAAGACAAAGGTTCAATACTTACAGCAGCAAAGGAGACATTGAACTCTTTGATGGCTGATATTGAAAAGATGACCAGAGGAGATCATCAGCAAGCGAAGGCACAAATGAAAGCCAAGAAATTATTATTAAGAGATCAAGAAAAGAAAACCAGTAGTACCTCCACTACTGAAAGATTGAGTGTGAGAGTCTCGGATGTGGGAGGGTCGAGCTCATCAGAGGAAAGATTCATGGACTTGCAAGTGACTGTGAGAGGAAGAAGCTATTATAATTCTCAGGTCCAGATATTGATTCGCCTACTGGAATTCTTGAAAGGGGTTCAGGGAGTTAGCTTAGTTTCTGTGCACGCTAACACACATGTAGCACAAGAAGGAGCCACCATTAATGAAGCAACTTTAACACTCAAGATAGAGGGCAGCGGATGGGATGAACCTGCTTTCAAAGAAGCAGTGAGAAGGGTGGTTGCTGACCTGACAGAGTGA 1476 0.4438 MDSVFSFSEAERLDFLQSALNTYGCAYICLWFYCPSSNRLLFLDGLCDAVSNCWGVFDQYRGLEFDVTPDNYGVPGLAFRNHLYTCLELQQSDLLRLACTPIQRRFFQTAVFIGCGNGEIELGFSVLSQAADDIHQTDVMRNLFTEEFSRLSHQAQLKNPSSCSLRSILSPASSPESTSLWCGNIPPAATGLLPEMLQQRQDNEHEAIVRAILLVISSPSSSSSNRSTFHHQNLPNIIHPEEGTSAFTRYRPNSEMSSKFPSLSKNPKQSFLKRSFELLRGLHYMRNMRQRYQSISHATRAHLLHVISERRRREKLNQNFQALRSLLPPGTKKDKGSILTAAKETLNSLMADIEKMTRGDHQQAKAQMKAKKLLLRDQEKKTSSTSTTERLSVRVSDVGGSSSSEERFMDLQVTVRGRSYYNSQVQILIRLLEFLKGVQGVSLVSVHANTHVAQEGATINEATLTLKIEGSGWDEPAFKEAVRRVVADLTE 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1076 491 Gene3D - 299 376 IPR036638 GO:0046983
Acco04g1076 491 Pfam Helix-loop-helix DNA-binding domain 305 349 IPR011598 GO:0046983
Acco04g1076 491 Coils Coil 361 381 - -
Acco04g1076 491 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 300 349 IPR011598 GO:0046983
Acco04g1076 491 CDD bHLH_AtbHLH_like 305 356 IPR045239 -
Acco04g1076 491 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 100 488 IPR044658 -
Acco04g1076 491 SMART finulus 306 355 IPR011598 GO:0046983
Acco04g1076 491 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 300 362 IPR036638 GO:0046983
Acco04g1076 491 MobiDBLite consensus disorder prediction 375 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1076 Acco-ChrAcco04 9978908 9982855 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1076 1 489 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 33.694 1.22e-61 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco04g1076 HLH 4.7e-10 No_clan