Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1049 ATGGAGGTCCTTCGGTTGGTGGAGCTTGTCGTCACCGATGGCCTGAAGCAGAGCTGCTGGGCCAACATTCCACTGGAGTTTCTCACAGAGGTGTTGGTCAGAATCGAAGCATCCGAAAGCTCCTGGCCTGCTCGCCGGAGCGTGGTGGCTTGCTCCGGGGTGTGCCGTACTTGGAGGCTCATCATGAAGGGTATCGTCAACACGATTCAAGTTTCCACTAAGATCACCTTCCCCATCTCTGTTAAGCAGCATGGCCCGAGGGATAATCCCCTCCAGTGCTTCGTAAAGCGCAACAGATCAACCCAGACATATTATTTGTTTCTCAGTTTAACTAATGCATTAAGTGATGATGGGAAGTTTCTTTTGGCGGCTCGCAGGTGTAGACGTGTCACCTGCATAGAGTATATCATCTCTCTTGATGCTCATGATATGTCAAAGGGAAGCAACACTTATGTTGGGAAACTGAGATCAAATTATATGCGAAACAAGTTCACAATTTATGATGGCCAGCCACCTCACAAAGGGGCAAAGAATACAAAAAGCCACTCCGGGAATCTAAATCAAGTTTCACCCGAGGTTTCTACGGGTAACTATCCAGTGGCACACATCTTATATGTGCTAGGCCACAGGATTCCAAGGAGAATGAAATGTGTCATGGACACCATTCCTGCCTCAGCAATTCAACCAGGAGGGGTGGGACAACCTGTACAGAGTGATTTTTCTCCGAGCAATGTAGAAAAGGTTCCATTGTTCCCATTTTTTAGGTCAAAATCAAATAGAAGTGAAAACTCTGTATCTGGATCCCCGTTCTGTGATAAGGTGCTAGTGTTAAAAAGTAAGCCTCCATGGTGGTCTGAGCAATTTCAACATTGGTGTTTGAACTTCAAAGGCAGAGTGACAGTTACTTCAGTTAAGAACTTTCAGCTGCAGGCTTCCCCAGAAAATGGACCTTCTGGAGAAGAACATGAGAAGATCATCCTTCAATTTGGGAAAGTAGGGAAGGATTTGTTTACCATGGATTACCAGTACCCCATCTCAGCATTTCAGGCTTTTGCAATAATCCTCAGCAGCTTTGAAACCCAAGTTCTTTAG 1092 0.4579 MEVLRLVELVVTDGLKQSCWANIPLEFLTEVLVRIEASESSWPARRSVVACSGVCRTWRLIMKGIVNTIQVSTKITFPISVKQHGPRDNPLQCFVKRNRSTQTYYLFLSLTNALSDDGKFLLAARRCRRVTCIEYIISLDAHDMSKGSNTYVGKLRSNYMRNKFTIYDGQPPHKGAKNTKSHSGNLNQVSPEVSTGNYPVAHILYVLGHRIPRRMKCVMDTIPASAIQPGGVGQPVQSDFSPSNVEKVPLFPFFRSKSNRSENSVSGSPFCDKVLVLKSKPPWWSEQFQHWCLNFKGRVTVTSVKNFQLQASPENGPSGEEHEKIILQFGKVGKDLFTMDYQYPISAFQAFAIILSSFETQVL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1049 363 SUPERFAMILY Tubby C-terminal domain-like 71 361 IPR025659 -
Acco04g1049 363 Pfam Tub family 81 360 IPR000007 -
Acco04g1049 363 PANTHER TUBBY-RELATED 16 361 - -
Acco04g1049 363 PRINTS Tubby superfamily signature 151 175 IPR000007 -
Acco04g1049 363 PRINTS Tubby superfamily signature 194 221 IPR000007 -
Acco04g1049 363 PRINTS Tubby superfamily signature 322 341 IPR000007 -
Acco04g1049 363 PRINTS Tubby superfamily signature 343 363 IPR000007 -
Acco04g1049 363 PRINTS Tubby superfamily signature 277 294 IPR000007 -
Acco04g1049 363 PRINTS Tubby superfamily signature 135 151 IPR000007 -
Acco04g1049 363 PRINTS Tubby superfamily signature 295 311 IPR000007 -
Acco04g1049 363 Pfam F-box domain 20 66 IPR001810 GO:0005515
Acco04g1049 363 Gene3D Tubby Protein; Chain A 80 359 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1049 Acco-ChrAcco04 9610513 9613012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1049 10 362 TUB Transcription Factor Family AT2G47900 60.440 2.89e-151 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Acco04g1049 Tub 6.4e-95 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g1049 04 9610513 9613012 Acco04g1049 04 9610513 9613012 ECH