Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco04g1025 | ATGGAGCGGTACGGCCGGGCAAGTGAAGAGTCGCAGTCCGATCCATCACCGGAATGGACTGGAACTGGAGGTGAAACGGGGCGTGAAGAATCTATGCGGCAATCGGGATTGGCTGGTGGGGAATCGTATCCACAACGGCCCGATGAGGCTGATTGCAACTACTATTTGAAGACTGGGTTTTGTGGGTATGGCTCGCGGTGTCGATACCATCATCCCCGTGACCGTGGCGCGGTTATAGGAGCTTCGATGACTGTCGTGGAGTATCCAGAGCGAGTAGGCCAGCCTTTATGTCAGTATTTTATGAGGACAGGGTCTTGCAAATTTGGTGCTTCATGTAAGTACCACCATCCTAGGCAGGGAGGAGGTGTTGCTCCTGTGCCACTTAATTTTTATGGATATCCATTACGACCGGATGAGAAAGAGTGTTCGTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCATCTTGTAAGTTTCACCATCCACAGCCTGCTGGTGTTCAAGTCCCTGCCCCATTACCAGTTCCCCATGCTTCAACTCTCCCTGTACAAGTACCTTCACCGTTCTATCCAACTATACAGCCTCCATCTGGTTCTTCGTCACAACAATATAGTGTAATGTTTGCAAGACCACCTCTACTACCAGGGTCATTATTGCAAAATCCTTACGGGCCTGTGGTAATGTCCCCTGTCCCTTTTTCAGGTTGGAATCCTTATCAGGCTCCTACAAGCCCTGCAGTTCCTTCTACTACTCCATCTAATGTTGGCTCAACACAATTTTATGCGAATACCCAGCTACCTTCACCAGCACCTGCCTATTCTGCACCATATCAAGCTCCAGGTTCCTCATTTGGTCCCTCAAGCACCAGTCCAAGAGAACAACATTCATTTCCAGAAAGACCTGGTCAACCAGAATGTCGGCATTACATGAGAACAGGGGAGTGTAGATTTGGTCCTTCCTGTAGATATCATCATCCACCTGAATTGATTGCACCAAATGTAAATGTGGTCCTTAGTCCTGTGGGTCTCCCTATGCGCCCGGGGGCTCCACCTTGCATTCATTATGCACAGCGGGGAGTATGTAAGTTTGGTCCTGCATGCAAGTTTGATCATTCTATAGGAGCGTTGACTTACAGTCCATCTGCATCTTCCCTTGATATGCCAGTGGTATCTGTTCCTGTGGGCTTGTCCATCAGTACTCTTGCACCACTGACTTCATCATCGGAGTTGCGGCCTGAACTTAGCCCTGGTTCAAGCGAGGAGCACGGATCGTTCAGAATGTCTTCATCAATGAGCACATCCACTGGACCAGTTGGCTTAGCTTCATCATCTGGTGGAACCGTTTCTCAGTCAGATGCTCAAACATCCACCCAAAGTTCTGCTCCAGCAGCAACTCCCACGATCACAACAAGCAGCAGCACTATCTCTCATACTCCAAGCTAA | 1443 | 0.4893 | MERYGRASEESQSDPSPEWTGTGGETGREESMRQSGLAGGESYPQRPDEADCNYYLKTGFCGYGSRCRYHHPRDRGAVIGASMTVVEYPERVGQPLCQYFMRTGSCKFGASCKYHHPRQGGGVAPVPLNFYGYPLRPDEKECSYYVKTGQCKFGASCKFHHPQPAGVQVPAPLPVPHASTLPVQVPSPFYPTIQPPSGSSSQQYSVMFARPPLLPGSLLQNPYGPVVMSPVPFSGWNPYQAPTSPAVPSTTPSNVGSTQFYANTQLPSPAPAYSAPYQAPGSSFGPSSTSPREQHSFPERPGQPECRHYMRTGECRFGPSCRYHHPPELIAPNVNVVLSPVGLPMRPGAPPCIHYAQRGVCKFGPACKFDHSIGALTYSPSASSLDMPVVSVPVGLSISTLAPLTSSSELRPELSPGSSEEHGSFRMSSSMSTSTGPVGLASSSGGTVSQSDAQTSTQSSAPAATPTITTSSSTISHTPS | 480 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco04g1025 | 480 | SUPERFAMILY | CCCH zinc finger | 349 | 376 | IPR036855 | GO:0046872 | |
| Acco04g1025 | 480 | Gene3D | - | 124 | 171 | - | - | |
| Acco04g1025 | 480 | SUPERFAMILY | CCCH zinc finger | 92 | 119 | IPR036855 | GO:0046872 | |
| Acco04g1025 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 300 | 328 | IPR000571 | GO:0046872 | |
| Acco04g1025 | 480 | SUPERFAMILY | CCCH zinc finger | 48 | 74 | IPR036855 | GO:0046872 | |
| Acco04g1025 | 480 | MobiDBLite | consensus disorder prediction | 243 | 305 | - | - | |
| Acco04g1025 | 480 | SUPERFAMILY | CCCH zinc finger | 304 | 328 | IPR036855 | GO:0046872 | |
| Acco04g1025 | 480 | MobiDBLite | consensus disorder prediction | 421 | 480 | - | - | |
| Acco04g1025 | 480 | SMART | c3hfinal6 | 91 | 118 | IPR000571 | GO:0046872 | |
| Acco04g1025 | 480 | SMART | c3hfinal6 | 346 | 373 | IPR000571 | GO:0046872 | |
| Acco04g1025 | 480 | SMART | c3hfinal6 | 46 | 73 | IPR000571 | GO:0046872 | |
| Acco04g1025 | 480 | SMART | c3hfinal6 | 300 | 327 | IPR000571 | GO:0046872 | |
| Acco04g1025 | 480 | SMART | c3hfinal6 | 138 | 163 | IPR000571 | GO:0046872 | |
| Acco04g1025 | 480 | MobiDBLite | consensus disorder prediction | 280 | 296 | - | - | |
| Acco04g1025 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 46 | 74 | IPR000571 | GO:0046872 | |
| Acco04g1025 | 480 | Gene3D | - | 42 | 120 | - | - | |
| Acco04g1025 | 480 | Gene3D | - | 291 | 375 | - | - | |
| Acco04g1025 | 480 | SUPERFAMILY | CCCH zinc finger | 137 | 164 | IPR036855 | GO:0046872 | |
| Acco04g1025 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 91 | 119 | IPR000571 | GO:0046872 | |
| Acco04g1025 | 480 | MobiDBLite | consensus disorder prediction | 243 | 271 | - | - | |
| Acco04g1025 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 302 | 327 | IPR000571 | GO:0046872 | |
| Acco04g1025 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 48 | 73 | IPR000571 | GO:0046872 | |
| Acco04g1025 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 138 | 163 | IPR000571 | GO:0046872 | |
| Acco04g1025 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 349 | 372 | IPR000571 | GO:0046872 | |
| Acco04g1025 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 94 | 118 | IPR000571 | GO:0046872 | |
| Acco04g1025 | 480 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
| Acco04g1025 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 136 | 164 | IPR000571 | GO:0046872 | |
| Acco04g1025 | 480 | PANTHER | PROTEIN PHOSPHATASE RELATED | 16 | 393 | - | - | |
| Acco04g1025 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 346 | 374 | IPR000571 | GO:0046872 | |
| Acco04g1025 | 480 | MobiDBLite | consensus disorder prediction | 405 | 480 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco04g1025 | Acco-ChrAcco04 | 9409817 | 9414426 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco04g1025 | 1 | 420 | C2H2 Transcription Factor Family | AT5G18550 | 53.986 | 9.16e-141 | 410 |
Transcription factors information