Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1015 ATGGGTTTGTTGAACTCACTGCATTTGAAACTGGCTTTGCTGGTTGCGGCGGCGGGGGCGGCGGCCGAAGCCCAGACGAAACCGGGCTGCAACTATACGTGTGAGAACGTGACCATCCCATATCCCTTTGGCACTAGCGAGAACTGCTACATCGATGAATTCTTTTCCGTCAATTGCACAACCACCACGTCACCATCTGGAAAAGCCACAACACAATTGACTTACGGCAAAAATATATCAGTCCTCGACATCTCCCTGGATCCTCCTGAATTAACCATCTCCGCAGACGTTTCCCACCATTGCTATAATTCAAGCTATGCGTATAGTGGGGCACGGTTCGGCAAGTTTTCTATATCAAACACGGAGAACAGATTCACTGTGGTGGGCTGTGACACCTACGCTTACTTCTGGGACCGGAACAGCACGTTTAATACTGGCTGCTTGTTGGGTTGCAGTAACGAGACGAGGTTTGAGGAAGCAGGGGCGTGCTCTGGTGTGGGATGCTGTCAGACCAGTTTCCCTCAAGCCATAAGGAACTATTACATCACCATAGGGAGCTATTACAACTACACGAACGTGAGTGACTTCAACCCTTGTGGCTATGCGTTTGTTGCCAAGGAAGGATCCTTCAACTTCTCATATCGAGAGCTGCTTGATCTCAGCAACAGAACACAATTTCCCCTGGTCTTGGATTGGGTTGTTTCCAATCAGACATGCCGTGAAGCCAAGAAAGATGCAAGGAACTATGCCTGCAAGCAAAACAGTAGATGTAATGACTCACGAAGTGGTATTGGGTACTACTGCGTATGTGAAGATGGTTTCAGAGGCAATCCCTATCTCTCTACCGGCTGCAAAGATATTAATGAGTGCGAGGAAACGAATAACTGCAGTAGGATATGCAACAATTTTGAAGGACATTACAAGTGTTCATGTCCGTGGGGTTATAGAGGCGATGGCTATAAAAACGGGTCAGGCTGCATGTTCCCCATCATAGAAATTTCACTGGGCATTTCCGTAGGCACGCTTGTTATCTTTACATTGATCTCAACTTTATGCTGGGGAAACAAGCAAAGAGCACTAAAACAACTTAGAAGACAATATTTTGAGCAAAATGGAGGAAATTATATGCTGCAGCAACTTCATCAACAACAAGGTTACACTGATAGAACCAAAATTTTTATTGAAGACGAGCTCAAAACTGCCACAAATAACTTTGATGAGAGCAAAATTCTCGGTCGTGGAGGACAAGGCACGGTTTACAAGGGCATATTACCAGATAACTCACTTGTTGCCATTAAAAAGTCCAGAGTAGGAGGTGACTCAAGACAAGTTAAGGATTTTATCAATGAAGTCACTGTACTTTCCCAAATCAACCATAGGAATGTGGTTAAACTTTTTGGGTGTTGTCTTGAAACTGAAGTTCCCTTGTTGGTTTATGAGTTTGTGGACAATGGCACCCTTCTTGACCATATAGACCCACTAAAGAATGAGCACTCTCTTTTCTTTGGGGTTGTGCTTGTGGAGCTCATCACTGGGAATAAAGCGGTTGAATTCACTAGGCCAGAACAAAAAAATTTGGCCATGTACTTTACATCTTCAATGAAAGAGGACAACTTATGGCAGATTCTTGACAATCGAGTGTTGGATCAGAAGAATGCGGAGCAATTAAAGGAGGTTGCTTTCTTAGCAAGGAGGTGCATTAGAGTGAATGGGGAGGAAAGGCCGACTATGAAAGAAGTAGCAACAGAATTAGGGGGTCTAATTGCTATGGAAAAGCATCCTTGGGTAGGAGGGGATATGATGTCTGAAGAATGTGAACGCTTGCTTGGTCATGTAGCTGATGGATATAGGAATGCTAGTGCTAGCACTTCAGCTGCCTATGATAGCATCCAGAAACAATTAGCATTTGAGATTGAAGATGGGCGATGA 1929 0.4448 MGLLNSLHLKLALLVAAAGAAAEAQTKPGCNYTCENVTIPYPFGTSENCYIDEFFSVNCTTTTSPSGKATTQLTYGKNISVLDISLDPPELTISADVSHHCYNSSYAYSGARFGKFSISNTENRFTVVGCDTYAYFWDRNSTFNTGCLLGCSNETRFEEAGACSGVGCCQTSFPQAIRNYYITIGSYYNYTNVSDFNPCGYAFVAKEGSFNFSYRELLDLSNRTQFPLVLDWVVSNQTCREAKKDARNYACKQNSRCNDSRSGIGYYCVCEDGFRGNPYLSTGCKDINECEETNNCSRICNNFEGHYKCSCPWGYRGDGYKNGSGCMFPIIEISLGISVGTLVIFTLISTLCWGNKQRALKQLRRQYFEQNGGNYMLQQLHQQQGYTDRTKIFIEDELKTATNNFDESKILGRGGQGTVYKGILPDNSLVAIKKSRVGGDSRQVKDFINEVTVLSQINHRNVVKLFGCCLETEVPLLVYEFVDNGTLLDHIDPLKNEHSLFFGVVLVELITGNKAVEFTRPEQKNLAMYFTSSMKEDNLWQILDNRVLDQKNAEQLKEVAFLARRCIRVNGEERPTMKEVATELGGLIAMEKHPWVGGDMMSEECERLLGHVADGYRNASASTSAAYDSIQKQLAFEIEDGR 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1015 642 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 300 311 IPR000152 -
Acco04g1015 642 FunFam Fibrillin 2 285 322 - -
Acco04g1015 642 SUPERFAMILY Protein kinase-like (PK-like) 391 588 IPR011009 -
Acco04g1015 642 Pfam Protein tyrosine and serine/threonine kinase 408 492 IPR001245 GO:0004672|GO:0006468
Acco04g1015 642 Gene3D Phosphorylase Kinase; domain 1 376 481 - -
Acco04g1015 642 ProSiteProfiles Protein kinase domain profile. 405 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco04g1015 642 CDD EGF_CA 286 318 - -
Acco04g1015 642 Gene3D Laminin 289 327 - -
Acco04g1015 642 ProSitePatterns Calcium-binding EGF-like domain signature. 286 309 IPR018097 GO:0005509
Acco04g1015 642 Pfam Wall-associated receptor kinase galacturonan-binding 30 92 IPR025287 GO:0030247
Acco04g1015 642 Gene3D Laminin 237 288 - -
Acco04g1015 642 SMART egfca_6 286 327 IPR001881 GO:0005509
Acco04g1015 642 FunFam Wall-associated receptor kinase 2 375 481 - -
Acco04g1015 642 SUPERFAMILY EGF/Laminin 286 319 - -
Acco04g1015 642 FunFam Wall-associated receptor kinase 2 237 284 - -
Acco04g1015 642 SMART egf_5 238 285 IPR000742 -
Acco04g1015 642 SMART egf_5 289 327 IPR000742 -
Acco04g1015 642 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 502 587 IPR045274 GO:0007166
Acco04g1015 642 Gene3D Transferase(Phosphotransferase) domain 1 501 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1015 Acco-ChrAcco04 9360262 9363952 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1015 488 642 Receptor kinase-like Gene Family AT1G21230 42.424 9.20e-27 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Acco04g1015 PK_Tyr_Ser-Thr 8.5e-15 CL0016