Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0897 ATGAATCTGAGCAACAACGTCAAGGGATCCATGTCAACGGCCAGTTCTAGTTCCGCTCGGAAATCCGGCGGTGACGGCGCCGGTGCCACCGACCAGTTCCCGGCGGGGTTGCGGGTACTGTTGGTCGACGACGATCCTACTTGCCTTATGATCCTTGAGAAGATGCTTCGTACTTGTCTCTACGAAGTAACAAAATGCAATAGAGCAGAAGTTGCATTGTCTCTTCTGAGAGAGAACAAAATCGGGTTCGACATAGTTATAAGCGATGTGCATATGCCAGACATGGATGGCTTTAAGCTTTTAGAGCACATAGGGTTGGAGATGGACCTTCCTGTTATTATGATGTCGGCAGATGACAGTAAAAATGTTGTTATGAAAGGTGTAACACATGGTGCTTGTGATTACCTAATAAAACCTGTGCGTATTGAGGCTTTGAAGAACATATGGCAGCATGTGGTTCGGAAAAAGAAGAATGAGTGGAAGGATTTGGAGCAATCGTATAATAGTACAGAAGAAGGAGATCGGCAGCACAAGGCGTCAGATGAAGCCGATTACTCGTCCTCAGCGAATGAAGGAAACTGGCGAAATGCTAAGAAGAAGAGAGATGAGGAGGAAGACGCAGAGGACAAGGATGATACTTCCACATTAAAGAAGCCACGCGTCGTTTGGTCTGTTGAGCTCCACCAACAGTTTGTAGCAGCCGTGAATCAACTGGGAATTGACAAGGCTGTTCCCAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTTACCCGAGAAAATGTTGCTAGCCATCTCCAGAAATACCGTCTATATCTAAGAAGACTCAGTGGTGTTTCTCAGCACCAGAGTAACATGAACCACTCTTTCATCAGTCCACAAGAAGCAACCTTTGGGACAATGTCTGTATTTAATGGAATCGATCTTCAAGCTCTTGCAGCTGCCGGCCAGCTGCCGGCACAGAGTCTAGCAGCACTTCAGGCAGCAGGAATCGGTAGATCAACTGCTAAAGTTGGGGTATCCGTGCCCCTTGTTGATGAAAGGAACCTTTTCAGTTTTGAAAACCCCAGATTAAGATATGTAGATGGGCAACAACAGCACTTGAGAAGTACTAAACCAACAAATTTGCTTCATGGAATCCCTACCAACATGGAGCCAAGGCAGCTCGCCAATTTGCACCAATCAACACAATCCCTTGGTGGCATGAATGTAAGAGTCAATGCATCTACTGCGCAGAGCAACTCTTTATTGATGCCAATGGCTCAATCTCAACCAAGAGGTCAGATGCTCAACGAAAATACCGCTTCGCATATTCCAAGAGTTCCATTATCTGTTGGGCAGCCTACTGTACCGAATGGAATTTCTAATGCTGCTCTGGGAAGAAATGGGATTGCTGGTAGCAACAGAGGAGCTGCTTATAATCCAATTCCGCAAACTACTACTTCGGTGGCAAGTTTCCCCGTGAACCAAGCTACAGAAATGTCTGCTAGCAGGTTCCCGCTTGGAAGCACACCAGGCATATCTAGTATCCCACCGAAAGGCACGTTTCAAGAGGAAGATGCCTCAAGAATCAAAGGATGTGGAGGATTTGTTCCAAGTTATGATATTTTCGAGGAACTGCATCAGCAAAAGTCCCATGATTGGGGACAAAATGTGGGCCTCACATCATATGATACCTCACAGTGTGTAAATTTACACGGTAACATTGATGTCTTGCCATCAGTTATAGTACATCAGAGCTTTTCTTCACCCACCCAAGAGACTGGACAGAATAGAGATTCTGCTCTGATCGGAAAAGCCATGTACTCCCAAGGGAAAGGTTTGGAACAAGGAAACCTCCAAAATATTGATCAAAACCTCCATCAACTTGTTGAAAATCCTGCAAGGGTCAAGACTGAAATAATTTCTGATGTAAACCCTCATTCTAACTTCTTCCCTGGGCTTTATGGCCAGGATGATCTCATGAGTGCACTTCTGAAACAGCAAGAAGCCATTGGAGCAGCTGAGAATGAATTTGACTATGACGGATATTCATTGGACAACATTCCGGTTTAA 2055 0.4516 MNLSNNVKGSMSTASSSSARKSGGDGAGATDQFPAGLRVLLVDDDPTCLMILEKMLRTCLYEVTKCNRAEVALSLLRENKIGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDSKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKKKNEWKDLEQSYNSTEEGDRQHKASDEADYSSSANEGNWRNAKKKRDEEEDAEDKDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQSNMNHSFISPQEATFGTMSVFNGIDLQALAAAGQLPAQSLAALQAAGIGRSTAKVGVSVPLVDERNLFSFENPRLRYVDGQQQHLRSTKPTNLLHGIPTNMEPRQLANLHQSTQSLGGMNVRVNASTAQSNSLLMPMAQSQPRGQMLNENTASHIPRVPLSVGQPTVPNGISNAALGRNGIAGSNRGAAYNPIPQTTTSVASFPVNQATEMSASRFPLGSTPGISSIPPKGTFQEEDASRIKGCGGFVPSYDIFEELHQQKSHDWGQNVGLTSYDTSQCVNLHGNIDVLPSVIVHQSFSSPTQETGQNRDSALIGKAMYSQGKGLEQGNLQNIDQNLHQLVENPARVKTEIISDVNPHSNFFPGLYGQDDLMSALLKQQEAIGAAENEFDYDGYSLDNIPV 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0897 684 SUPERFAMILY CheY-like 36 160 IPR011006 -
Acco04g0897 684 Pfam Myb-like DNA-binding domain 220 270 IPR001005 -
Acco04g0897 684 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 217 274 IPR017930 -
Acco04g0897 684 PANTHER TWO-COMPONENT RESPONSE REGULATOR 37 365 IPR045279 GO:0009736
Acco04g0897 684 MobiDBLite consensus disorder prediction 1 27 - -
Acco04g0897 684 PIRSF RR_ARR_type-B 10 671 IPR017053 GO:0003677|GO:0003700|GO:0009736
Acco04g0897 684 Gene3D - 215 277 - -
Acco04g0897 684 MobiDBLite consensus disorder prediction 165 184 - -
Acco04g0897 684 SMART REC_2 37 149 IPR001789 GO:0000160
Acco04g0897 684 SUPERFAMILY Homeodomain-like 215 275 IPR009057 -
Acco04g0897 684 CDD REC_typeB_ARR-like 39 153 - -
Acco04g0897 684 Gene3D - 37 177 - -
Acco04g0897 684 MobiDBLite consensus disorder prediction 194 214 - -
Acco04g0897 684 MobiDBLite consensus disorder prediction 165 214 - -
Acco04g0897 684 Pfam Response regulator receiver domain 39 147 IPR001789 GO:0000160
Acco04g0897 684 FunFam Two-component response regulator 37 174 - -
Acco04g0897 684 NCBIfam myb-like DNA-binding domain, SHAQKYF class 218 271 IPR006447 GO:0003677
Acco04g0897 684 ProSiteProfiles Response regulatory domain profile. 38 153 IPR001789 GO:0000160
Acco04g0897 684 MobiDBLite consensus disorder prediction 1 23 - -
Acco04g0897 684 FunFam Two-component response regulator 214 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0897 Acco-ChrAcco04 8016757 8019758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0897 71 684 Response Regulator Gene Family AT3G16857 48.862 1.09e-171 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Acco04g0897 Response_reg 1e-22 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g0897 04 8016757 8019758 Acco04g0897 04 8016757 8019758 ECH