Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0894 ATGGATCCGAGTAGGAAAGGATCGGAAGCAGAGGACGCTAATGCGAGGAATCCAAATGGGGCTTCGCTGGAAGAGGGTCCGACAATGAGCGAGCAGAAGAAAACTTGCGCCGATTGCGGCACCACCAAGACCCCTCTCTGGCGCGGCGGTCCAGCTGGGCCCAAGTCACTGTGCAACGCTTGTGGGATCAAAAGCAGGAAGAAGAAGAGAGCGATTCTGGGTTTGAAAGGGAAGAGAAGCAATAGTAATAATAACAGCAATGGAAGCAGCAAGATTGGGGATAGTTTGAAGCAGAGGTTAATGGCTTTGGGAAGGGAGGTTTTGATGCGGAGATCAACAGCGGAGAGGCAGAGGAAGAAGTTGGGAGAGGAAGAACAAGCAGCAGTTCTATTAATGGCTCTCTCATATGGATCTGTTTATGCTTAG 426 0.5047 MDPSRKGSEAEDANARNPNGASLEEGPTMSEQKKTCADCGTTKTPLWRGGPAGPKSLCNACGIKSRKKKRAILGLKGKRSNSNNNSNGSSKIGDSLKQRLMALGREVLMRRSTAERQRKKLGEEEQAAVLLMALSYGSVYA 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0894 141 MobiDBLite consensus disorder prediction 1 53 - -
Acco04g0894 141 MobiDBLite consensus disorder prediction 72 96 - -
Acco04g0894 141 ProSitePatterns GATA-type zinc finger domain. 36 61 IPR000679 GO:0006355|GO:0043565
Acco04g0894 141 PANTHER OS01G0976800 PROTEIN 6 141 - -
Acco04g0894 141 CDD ZnF_GATA 35 70 IPR000679 GO:0006355|GO:0043565
Acco04g0894 141 ProSiteProfiles GATA-type zinc finger domain profile. 30 66 IPR000679 GO:0006355|GO:0043565
Acco04g0894 141 MobiDBLite consensus disorder prediction 21 39 - -
Acco04g0894 141 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 32 70 - -
Acco04g0894 141 Pfam GATA zinc finger 36 70 IPR000679 GO:0006355|GO:0043565
Acco04g0894 141 MobiDBLite consensus disorder prediction 77 94 - -
Acco04g0894 141 SMART GATA_3 30 80 IPR000679 GO:0006355|GO:0043565
Acco04g0894 141 Gene3D - 31 94 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0894 Acco-ChrAcco04 7990144 7990764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0894 1 141 C2C2-Gata Transcription Factor Family AT3G06740 56.376 1.21e-50 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco04g0894 GATA 9.3e-17 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g0894 04 7990144 7990764 Acco04g0894 04 7990144 7990764 ECH