Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0893 ATGTCGCTCCGGCCGAATGCTAGAACCGAGGTTCGCCGCAATCGCTACAAGGTCGCGGTGGACGCCGATGAGGGCCGACGAAGAAGAGAAGATAATATGGTTGAGATCCGTAAGAGCAAGCGCGAAGAGAGTCTGCAGAAGAAGCGTCGCGAAGGCCTGCAAGCTCAGCAGCAATTCGCCACTCCTATTCAAACTTCAACTGTTGAGAAAAAGTTGGAGAGTCTTCCTTCCATGGTGAATGGTGTTTGGTCGGATGACAGCAGTCTGCAGCTGGAAGCGACTACACAATTTCGAAAGCTGCTTTCTATTGAACGGAGCCCTCCAATTGAGGAAGTTATCCAATCTGGTGTGGTGCCGCGATTTGTTGAGTTTCTAGTTAGGGAAGATTTCCCTCAGCTTCAGTTTGAGGCCGCATGGGCCCTTACTAATATAGCATCTGGAACGTCTGAGAACACCAAGGTGGTAATTGATCACGGGGCAGTCCCAATATTTGTTAAGCTGCTTAGTTCTCCTAGTGACGATGTTCGGGAGCAGGCCGTGTGGGCACTGGGAAATGTTGCTGGTGACTCTCCTAGGTGCCGTGATCTTGTTCTCAGTCATGGTGCTCTTATCCCCTTATTGGCTCAGTTGAATGAGCACGCAAAGCTTTCAATGTTGAGAAATGCTACATGGACACTATCCAATTTTTGCAGGGGCAAGCCACAACCCCCATTTGAGCAGGTGAGGCCAGCACTTACGGCTTTAGAGCGATTGGTTTTTTCCAATGATGAAGAAGTCCTGACAGATGCTTGCTGGGCACTTTCTTACTTATCGGATGGGACAAATGATAAAATCCAAGCAGTTATTGAGGCAGGTGTTTGTGGCCGATTAGTGCAGCTCCTTCTGCATCCATCTCCTTCAGTTCTTATTCCTGCTCTTCGCACAGTGGGAAATATTGTGACTGGAGATGATATTCAGACTCAGAGTATTATCAACCATGGTGCACTGCCATGCCTTTTGAGCCTGTTGACACATAATCACAAGAAAAGCATCAAGAAAGAAGCCTGCTGGACCATATCAAACATCACTGCTGGAAACAGAGAACAAATACAGGCTGTAATTGAAGCTGGTCTTATTGCTCCACTTGTCAATCTCCTTCAAAATGCTGAGTTTGATATCAAGAAGGAAGCTGCATGGGCAATCTCAAATGCCACATCTGGTGGTACTCATGAGCAGATAAAGTACTTGGTGAGTCAAGGTTGCATAAAGCCGCTCTGTGATCTGCTTGTTTGCCCAGACCCAAGGATTGTCACTGTCTGTTTAGAAGGCCTAGAGAATATCCTTAAGGTCGGGGAAGCTGAGAAGAGCCTGGGTAACACTGGAGATGTCAACTTAGTCATGACAACAATGAGATATATGAGAAAGCTGTAA 1410 0.4709 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFATPIQTSTVEKKLESLPSMVNGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALTALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVQLLLHPSPSVLIPALRTVGNIVTGDDIQTQSIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNREQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNLVMTTMRYMRKL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0893 469 SMART arm_5 233 272 IPR000225 GO:0005515
Acco04g0893 469 SMART arm_5 148 188 IPR000225 GO:0005515
Acco04g0893 469 SMART arm_5 359 399 IPR000225 GO:0005515
Acco04g0893 469 SMART arm_5 316 357 IPR000225 GO:0005515
Acco04g0893 469 SMART arm_5 402 442 IPR000225 GO:0005515
Acco04g0893 469 SMART arm_5 189 231 IPR000225 GO:0005515
Acco04g0893 469 SMART arm_5 105 146 IPR000225 GO:0005515
Acco04g0893 469 SMART arm_5 274 314 IPR000225 GO:0005515
Acco04g0893 469 Gene3D - 73 465 IPR011989 -
Acco04g0893 469 FunFam Importin subunit alpha 73 466 - -
Acco04g0893 469 Pfam Importin beta binding domain 12 95 IPR002652 GO:0006606|GO:0061608
Acco04g0893 469 SUPERFAMILY ARM repeat 6 452 IPR016024 -
Acco04g0893 469 MobiDBLite consensus disorder prediction 23 57 - -
Acco04g0893 469 FunFam Importin subunit alpha 11 50 - -
Acco04g0893 469 MobiDBLite consensus disorder prediction 23 50 - -
Acco04g0893 469 Gene3D - 11 50 IPR036975 GO:0006606
Acco04g0893 469 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 370 398 IPR000225 GO:0005515
Acco04g0893 469 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 370 IPR000225 GO:0005515
Acco04g0893 469 Pfam Armadillo/beta-catenin-like repeat 190 231 IPR000225 GO:0005515
Acco04g0893 469 Pfam Armadillo/beta-catenin-like repeat 403 440 IPR000225 GO:0005515
Acco04g0893 469 Pfam Armadillo/beta-catenin-like repeat 244 271 IPR000225 GO:0005515
Acco04g0893 469 Pfam Armadillo/beta-catenin-like repeat 359 398 IPR000225 GO:0005515
Acco04g0893 469 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Acco04g0893 469 Pfam Armadillo/beta-catenin-like repeat 275 313 IPR000225 GO:0005515
Acco04g0893 469 Pfam Armadillo/beta-catenin-like repeat 319 357 IPR000225 GO:0005515
Acco04g0893 469 Pfam Armadillo/beta-catenin-like repeat 106 146 IPR000225 GO:0005515
Acco04g0893 469 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Acco04g0893 469 PANTHER IMPORTIN ALPHA 12 456 - -
Acco04g0893 469 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Acco04g0893 469 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Acco04g0893 469 PIRSF Importin_alpha 2 468 IPR024931 GO:0005737|GO:0006606|GO:0061608
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0893 Acco-ChrAcco04 7972239 7975826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0893 131 391 U-box Gene Family AT3G46510 24.809 2.05e-09 58.2