Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0886 ATGTCCACACTTGTTGAAGATACAATATTCAGATCCAAGAAAGTATTAACAGGAAGAGCTCCTTGCTGTGACAAGGTTGGTCTCAAAAAAGGACGGTGGACTTCCGAGGAAGACAAAATCTTGACCGACTATATTCAACTTCATGGCGAAGGCTCCTGGAGATCCTTGCCCAAAAATGCAGGGTTACTAAGGTGTGGGAAGAGTTGCAGACTGAGATGGATAAACTATTTGAGAGAAGACGTCAAGAGAGGCAACATTACTTCTCAGGAAGAGGCCATGATTGTGAAGCTTCATGGTGCCATCGGTAACAGGTGGTCTGTAATAGCAAGGCATCTACCAGGAAGAACAGATAATGAGATAAAGAATTATTGGAACTCTCATTTGCGAAGAAAAATATATTGCTTCATGAAACCCTCAACCTCCAACTGTGACACTCTCCCACCGATCGATATTGCTGCTCTGAACGCAGCTGCTTCTTCCAAACGAGGAAGATCAGGTGGTCGAGGCAGACCAACTCAAGCTCCCATACAAGAGGAGGACAAGAACAATAACAACACTTCAAATCAATACTCGCACTCAGATATGAATGCCCATGACCTATTTGGCGAAATGCATCAAAGAAAAGAAAACCCAGATGAAGCTGAGGCAATTTCAATTATGGGTTCTAGATGTTGGAGCCAGAATCATCATCAAGAAGAGACCTTTGATGGAATTGGTTTGGATGCATATTGTGAGATGAGTAGAGATGATACAAATGGCAAAGCAGGATTTTGCACCAATATGGATGGAGGGGGTGAGGCCTCGGGGCCATTTGAATGGCTAGATGATGAAGTAATGAAACTTAATTACATGTTTGAAAGTGGGTTGCTTGTGAACCCAACCAGTAGTGGAAATAACAGTATGGAAAGAGAATATGGCTATGGGATGAATCTTCCAACAAGCGAGGATAGGAAAAGTGGTGTTTGGAGCTCAGAATTAAATTACACAGAGAGTGGGGAGTGGCATAACAACAACAATAATAGTAGCAGTACATCATCAGGGAACTCTGTTTATGATTATCAGTGGGCTGACTGGGATATTTCAGCTAGTGCCCAATCCCATAATCAATGGAACGTGCAGTACTCTGAAGAAAGCCAGATGATGGATTGTTTGTGGGATGCCGCTGCAAATGGTGAAGTAAATAACTTCCACTGA 1194 0.428 MSTLVEDTIFRSKKVLTGRAPCCDKVGLKKGRWTSEEDKILTDYIQLHGEGSWRSLPKNAGLLRCGKSCRLRWINYLREDVKRGNITSQEEAMIVKLHGAIGNRWSVIARHLPGRTDNEIKNYWNSHLRRKIYCFMKPSTSNCDTLPPIDIAALNAAASSKRGRSGGRGRPTQAPIQEEDKNNNNTSNQYSHSDMNAHDLFGEMHQRKENPDEAEAISIMGSRCWSQNHHQEETFDGIGLDAYCEMSRDDTNGKAGFCTNMDGGGEASGPFEWLDDEVMKLNYMFESGLLVNPTSSGNNSMEREYGYGMNLPTSEDRKSGVWSSELNYTESGEWHNNNNNSSSTSSGNSVYDYQWADWDISASAQSHNQWNVQYSEESQMMDCLWDAAANGEVNNFH 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0886 397 SUPERFAMILY Homeodomain-like 27 124 IPR009057 -
Acco04g0886 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 77 IPR017930 -
Acco04g0886 397 MobiDBLite consensus disorder prediction 158 194 - -
Acco04g0886 397 SMART sant 29 79 IPR001005 -
Acco04g0886 397 SMART sant 82 130 IPR001005 -
Acco04g0886 397 CDD SANT 32 77 IPR001005 -
Acco04g0886 397 CDD SANT 87 128 IPR001005 -
Acco04g0886 397 Pfam Myb-like DNA-binding domain 30 77 IPR001005 -
Acco04g0886 397 Pfam Myb-like DNA-binding domain 83 128 IPR001005 -
Acco04g0886 397 MobiDBLite consensus disorder prediction 176 194 - -
Acco04g0886 397 Gene3D - 27 83 - -
Acco04g0886 397 FunFam Myb transcription factor 27 83 - -
Acco04g0886 397 Gene3D - 87 132 - -
Acco04g0886 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 132 IPR017930 -
Acco04g0886 397 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 18 222 - -
Acco04g0886 397 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Acco04g0886 397 ProSiteProfiles Myb-like domain profile. 25 77 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0886 Acco-ChrAcco04 7923668 7927210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0886 18 281 MYB Transcription Factor Family AT5G49330 47.727 1.62e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco04g0886 Myb_DNA-binding 1.5e-13 CL0123