Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0875 ATGGCAAATAACTTAACGGGCCAGCTCGTTGGTTCAGAGATACATGGATTCCATACATTGCAAGAGCTGGATGTTAAGAACACTATGGAGGAAGCAAAAAGCAGGTGGCTTCGCCCTAATGAGATTCAAGCTATACTTAGTAATTACAAGTATTTCTCCATCCATGTGAAGCCAGTGCATTTGCCTCCAAGTGGTACTATTGTTTTATTCGACCGCAAGATGCTTAGAAACTTTCGAAAAGATGGATACAACTGGAAAAAGAAAAAGGATGGAAAGACTGTGAAGGAAGCTCATGAACACTTAAAAGTTGGTAATGAAGAAAGGATCCATGTATACTATGCACACAGTCAGGATAAGCCAACATTTGTGCGTAGATGTTATTGGCTTCTTGACAAGAGCTTGGAACACATAGTTCTTGTTCATTATCGTGAAACACAAGAGTTGCAGGGCTCTCCAGCTACACCTGTAAATTCAAATTCAAGTTCAAGTTCAGTCTCTGATCCAGTTGCGCCGTTTATTTTATCAGAAGAATTGGATTCTGGGACCAAAAATCCATATGCTGGTGAAGTTGATGACAATTTGAAACTCAAGAGTCATGAACTGAGGCTTCTTGAGCTCAATACACTTGAATGGGATGATTTAGTAGTTACAAATGACCCCAACAACTCTACCACATCTATTGGAGACAAGGTTCCATATTTTGATCAACAAAATCAGTCTTTGCTTAATGGCAATCTAAGCAACGTTACTAGCAGCCTGTCTGCTGAAATTCCTTCTTTTGATAACATAACACAACCTATCACTGGGAGCACCAGTACACCTTATGGTTTCCCAGAAGCTGTAAATCTTCAGACAATGGATACTCAAGCAAATCCGAATGCACAGAAGGGATATTCTGTCTCTGTGGGTGGTGTTGGTTCTTTGGACACTTTGGTTGATGATACTTTGCAGAGTCAAGACAACTTTGGAAGGTGGATCAACCACATGATGTCTGATTCACCTGTTATATCTATTCAAGAACCATGTTCTTCTTTGGTAGAGGATCATCAACAACCTTCTCTGTCTGAACGACTTTTTAATATCACCGACGTCTCTCCTTCATGGGCATCTTCCACTGAGAAGACCAAGATCCTGGTCACTGGAATCTTCCATGATAACTATCTGCATCTTGGAAAGTCCAATCTATTTTGTGTCTGTGGTGATGTAAGTGTTCAAGCTGAAATTGTTCAAGTTGGGGTCTACCGATGCTGGGTTTCATCACATTCTCCAGGATTCGTAAATCTCTATATGAGCCTTGATGGCCATAAGCCCATAAGCCAGGTTGTCAATTTTGAAATTCGTACTCCAGTTTTGCATGACCCTACACCCTCTATAGAAGAGAAGTACAACTGGGCTGAGTTTCGACTTCAAACGAGGCTTGCTTGTTTGCTCTCTAGTACTCATAAGAGTCTTGATATTATCTCTACTAAAGTATCACCTAATGCAATAAAGGAGGCTAAAAGCTTTGCTTCAAAGACCTCGCTGGTTTTCAAAAGTTGGCAATACTTGGTGAAGTTAGCTGAAGACAACAAAACTCCATTTCCTCAAGCAAAAGATGCACTGTTTGAAACCTCCTTGAAAAACGGATTAAAGGAATGGCTATTAGAAAGAATTCTCTTGGGCCGTAAGACTACAGAATATGATTCCCAAGGTCAAGGTGTAATCCATTTGTGCGCAACTCTAGGATATACTTGGGCTATTTCGTTATTTTCAGGATCAGGCTTGTCCCTAGATTTTCGAGATAAATTTGGATGGACAGCTCTTCATTGGGCAGCGTATAGTGGAAGGGGGCATATGGTTGCGTTGCTGCTATCTGCTGGGGCAAAGCCTAACTTAGTCACAGATCCTACTCCACAGAATCCTGGTGGATGTATTGCCGCTGATCTTGCTTATATGAAGGGTTATGATGGCTTAGCAGCTTATCTTTCGGAAAAATCTCTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATTAGCGGCAAACTGGAAACAAGCACAAATGATCCAGTAGAGTATGAGAATCTTACTGAGGATCAACTAAACCTAAAGGATACATTGGCAGCTTACCGAACAACTGCTGAGGTAGCAGCACGAATACAGGCTGCATATAGGGAGCACTCACTAAAAGTACAAACAAAGGCAATTCAGAGTTTAAATCCAGAGGATGAGGCCCGCATGATTGTTGCAGCATTGAAGATTCAACATGCCTACCACAACTATAGCACAAGGAAGATGATGGCAGCTGCAGCTCGCATCCAGCATAGGTTCCGTACATGGAAATTGCGTAAGGAATTTCTCAACATGCGACGTCAGGCTATCACAATCCAAGCTGCTTTCCGGGCCTACCAAGTGAGGAGGCAGTATCGTAAAATTCTCTGGTCTGTTGGAGTACTTGAAAAAGCAATCCTGCGATGGCGACTGAAGAGAAAAGGCTTCCGTGGACTTCAGGTTAACCCTGTCCAACAAGAGCAAGAACCAAAGCAGGAAATTGACGCAGAGGAGGACTTCTTCCGGACTGGTCGAAAACAAGCAGAAGAACGCGTGGAGAGATCTGTAGTACGTGTTCAGGCCATGTTCCGTTCAAAGAAAGCACAAGAAGATTATAGGAGGATGAAGCTAGCTCACAATCAAGCAAAGTTGGAACTTGAACTTGAAGAGCTGCTCAATTCAGAGGTTGACATGTTATAG 2733 0.4226 MANNLTGQLVGSEIHGFHTLQELDVKNTMEEAKSRWLRPNEIQAILSNYKYFSIHVKPVHLPPSGTIVLFDRKMLRNFRKDGYNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHSQDKPTFVRRCYWLLDKSLEHIVLVHYRETQELQGSPATPVNSNSSSSSVSDPVAPFILSEELDSGTKNPYAGEVDDNLKLKSHELRLLELNTLEWDDLVVTNDPNNSTTSIGDKVPYFDQQNQSLLNGNLSNVTSSLSAEIPSFDNITQPITGSTSTPYGFPEAVNLQTMDTQANPNAQKGYSVSVGGVGSLDTLVDDTLQSQDNFGRWINHMMSDSPVISIQEPCSSLVEDHQQPSLSERLFNITDVSPSWASSTEKTKILVTGIFHDNYLHLGKSNLFCVCGDVSVQAEIVQVGVYRCWVSSHSPGFVNLYMSLDGHKPISQVVNFEIRTPVLHDPTPSIEEKYNWAEFRLQTRLACLLSSTHKSLDIISTKVSPNAIKEAKSFASKTSLVFKSWQYLVKLAEDNKTPFPQAKDALFETSLKNGLKEWLLERILLGRKTTEYDSQGQGVIHLCATLGYTWAISLFSGSGLSLDFRDKFGWTALHWAAYSGRGHMVALLLSAGAKPNLVTDPTPQNPGGCIAADLAYMKGYDGLAAYLSEKSLVEQFNDMSLAGNISGKLETSTNDPVEYENLTEDQLNLKDTLAAYRTTAEVAARIQAAYREHSLKVQTKAIQSLNPEDEARMIVAALKIQHAYHNYSTRKMMAAAARIQHRFRTWKLRKEFLNMRRQAITIQAAFRAYQVRRQYRKILWSVGVLEKAILRWRLKRKGFRGLQVNPVQQEQEPKQEIDAEEDFFRTGRKQAEERVERSVVRVQAMFRSKKAQEDYRRMKLAHNQAKLELELEELLNSEVDML 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0875 910 Coils Coil 876 905 - -
Acco04g0875 910 ProSiteProfiles IQ motif profile. 760 789 IPR000048 GO:0005515
Acco04g0875 910 SMART CG_1_2 29 146 IPR005559 GO:0003677
Acco04g0875 910 ProSiteProfiles Ankyrin repeat profile. 596 628 IPR002110 GO:0005515
Acco04g0875 910 Gene3D Immunoglobulins 354 449 IPR013783 -
Acco04g0875 910 Pfam IQ calmodulin-binding motif 785 804 IPR000048 GO:0005515
Acco04g0875 910 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Acco04g0875 910 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Acco04g0875 910 Gene3D - 529 665 IPR036770 -
Acco04g0875 910 ProSiteProfiles IQ motif profile. 864 892 IPR000048 GO:0005515
Acco04g0875 910 ProSiteProfiles Ankyrin repeat region circular profile. 596 624 - -
Acco04g0875 910 SMART ANK_2a 596 625 IPR002110 GO:0005515
Acco04g0875 910 SMART iq_5 862 884 IPR000048 GO:0005515
Acco04g0875 910 SMART iq_5 782 804 IPR000048 GO:0005515
Acco04g0875 910 SMART iq_5 759 781 IPR000048 GO:0005515
Acco04g0875 910 SUPERFAMILY E set domains 360 445 IPR014756 -
Acco04g0875 910 SUPERFAMILY Ankyrin repeat 540 658 IPR036770 -
Acco04g0875 910 MobiDBLite consensus disorder prediction 148 167 - -
Acco04g0875 910 ProSiteProfiles IQ motif profile. 783 807 IPR000048 GO:0005515
Acco04g0875 910 Pfam Ankyrin repeats (3 copies) 548 625 IPR002110 GO:0005515
Acco04g0875 910 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 24 892 - -
Acco04g0875 910 Gene3D - 759 807 - -
Acco04g0875 910 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 707 810 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0875 Acco-ChrAcco04 7751913 7761050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0875 29 896 CAMTA Transcription Factor Family AT3G16940 55.782 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Acco04g0875 CG-1 1.1e-46 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g0875 04 7751913 7761050 Acco04g0875 04 7751913 7761050 ECH