Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0793 ATGAATATGGATATGGAAACTTCAGAAATCATCGGAGGAAGCTGCAAACTCCAAAACGACGACGAATTGGACCTCCGGCGAGGTCCTTGGACCGTCGACGAAGACCTCACTCTCATCAATTACATTGCCACTCACGGCGAAGGTCGCTGGAACTCCCTCGCTCGATCCGCTGGGCTCAAACGAACTGGTAAGAGCTGCAGATTGAGATGGCTCAACTATCTCCGGCCCGATGTCCGACGTGGCAACATCACCCTCGAAGAACAGCTCCTGATTCTCGAGCTTCATTCTCGCTATGGAAACAGATGGTCGAAAATCGCGCAGTACTTGCCGGGAAGGACAGACAACGAGATCAAGAACTACTGGAGAACACGAGTTCAAAAACACGCGAAGCAGCTCAAATGTGACGTGAACAGCAAGCAATTCAAGGACACCATGCGTTATCTCTGGATGCCCAGGCTCGTCGAGCGTATTCAAGCCTCCTCCTCCTCCTCCTCCTCCGCCACCGTGGCCGCCGCCGCCGTCTCCGTTTCTCCCCCTTTATCTACCATCGCCGCGGCTGCCCCCAATCACGCCCCATACAATTACAACAATTTTGAGTTTGGACCGGGCGTCGCCTCTCAGGTCACCGGAAGCAACTACACAACGACTGAGAATAGCAGCGCGGCGGCTTCATCTGAGTCGTTCGGGTCGACTCAGGTGTCGGACTTGACGGAGTATTACTACGTTGGGGTTCCGGTTGGGAATAGGGGTAACCCTAATACGGATTACGGTCAAACTGGGGAATTGAGCTACTCGGATAGCATGAGCTTCTTGGATATGCAAACCGTGAAGCCAAACAACGGCGGCAGTAACTACCAGTATTGGGTAGGGGACACGTCGGACAATTTTTGGAATGTTGAGAACATGATGTTTTTACAGCAACAGCTCAGTGACAACATGTAG 942 0.5255 MNMDMETSEIIGGSCKLQNDDELDLRRGPWTVDEDLTLINYIATHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRYGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIQASSSSSSSATVAAAAVSVSPPLSTIAAAAPNHAPYNYNNFEFGPGVASQVTGSNYTTTENSSAAASSESFGSTQVSDLTEYYYVGVPVGNRGNPNTDYGQTGELSYSDSMSFLDMQTVKPNNGGSNYQYWVGDTSDNFWNVENMMFLQQQLSDNM 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0793 313 SMART sant 79 127 IPR001005 -
Acco04g0793 313 SMART sant 26 76 IPR001005 -
Acco04g0793 313 Gene3D - 84 147 - -
Acco04g0793 313 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Acco04g0793 313 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 23 216 IPR044676 GO:0003700|GO:0006355|GO:0043565
Acco04g0793 313 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Acco04g0793 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Acco04g0793 313 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Acco04g0793 313 CDD SANT 95 123 IPR001005 -
Acco04g0793 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 74 IPR017930 -
Acco04g0793 313 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Acco04g0793 313 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Acco04g0793 313 FunFam Myb transcription factor 27 79 - -
Acco04g0793 313 Gene3D - 24 80 - -
Acco04g0793 313 FunFam MYB transcription factor 84 147 - -
Acco04g0793 313 CDD SANT 29 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0793 Acco-ChrAcco04 6895881 6897277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0793 12 266 MYB Transcription Factor Family AT3G06490 62.934 6.80e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco04g0793 Myb_DNA-binding 4.3e-15 CL0123