Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0774 ATGGCAACAGCTGAGGCAGCTCCTGCTGCCCTTGGTCCCCGATACGCACCTGATGACCCCACTCTTCCAAAACCTTGGAAGGGATTGATTGATGGAAGTACGGGTCTATTATACTATTGGAACCCTGAAACCAACATCACCCAGTATGAAAAGCCGCAACCCTTGCCTGCTGGACCACCTCAGTCAGTTTCTGCACCCAAGTTGGCTCCCATACCAACGGCTCATAAAGGGCAACCTGGTGTGGTGGTGTCACAGCAAGGGCAGCAGTTACTACAAACCTCTCACCAACAGGGACAGCAGATGAGCCACCTACCCCAACAGCATAGTCCCCAGGTAGCACAGGTCGGTCAGCAGCAGCCTTCTCAAGCAGCACAAGCTGGACAACAACAGAGTTCACAGCAGCTGCAGTCTATGCCACAACCAGGTTTGCAACAAGTCAGGCAGCAGCAGATGTTGCAGCCTCTGAGCCAGCAAGTTCCGCCACAGCAAATGCATCATCAGATGCCTCAACAAGCCGTCCAGCCGCAACCTTTTGGGCAAGGAGTCACCCAGGATCATGGTTCATATATGGGACAGCCACAAGCCCATCAATTCATTCACCAGAACCTACATTACATGCCATATTCACAAAGCATGCACTCAAATGGGCAGCAAAATTCCCAACCAGTACAGCATAACATGCACGGTCAGCCATTGGAAAATCAACATGAGTTTAAAGCAGCATTCCCAAAGATAGAGGATGTAGATTTTAAAAACGGAAGTCAAGTTGGGTTTTCACCATCCCAGTATCAGCAAAAGAATGCCTTGCCTCTGCAAAGCAATCAGAATATTCCTTCTGGAATTTCCTCTGTCCAGATGTCACGTGTTGGTGTTAATGCTGGCCAAGCACAACCATTCAGTGCTATGTCTGGTGGTATGCAGCAACCTTCTCAAGCAATGCAATCGCAGCAGGGTAGTGCTGATTTACTTTATCAACATGGTCATAACTTTCAAAACCAGATGGGCCCAGGAATGATGCATGGTCAGCCATCTAATGTGCATCCTGTTGACCCAAAGATGGGACATGAGGAAAACTTGCGTGGCAGAGCTGTGAATGAATATTACCACAACTCGGGCAAGGAGATGCCAACAATGGGTTCTCAGCAGCCAAGTATTGCACCAGTACCCATTTCAAGAAATCAGCAGGCTTATCAGCAGGATATGAGAATTGGCAGTTCCCCTTTTCAAAATGCAATGCCTGGTGGGAATGGGTTAAATGGCATCCCAGGGCATAGTATGCATAACATGTTTAATCCTTCGATTGGAGGTGCTCCACCTGTTGCTAGTAACTCTTTGGCAAGGCCTCATGTCCCTGATCTGTCACCTGCTGAAATTTACTGTCAACAACATGAGGTTACAGCTACGGGCGACAATGTCCCTCCCCCCTTTATGACATTTGATGCTGCTGGGTTTCCTCCAGAGATTTTGAGAGAGATCTATTCTGCGGGCTTCTCAACTCCAACGCCAATTCAAGCTCAAACATGGCCTGTTGCCCTACAGGGTAGGGACATAGTGGCTATTGCCAAAACAGGCTCCGGAAAAACATTGGGTTATTTAATACCTGCATATATGATTCTTAGACAGAGGCGTAACAATCCCCTGAATGGCCCTACAGTGTTGGTATTGGCTCCAACACGTGAACTTGCAACACAAATTCAAGATGAAGCTATAAAATTTGGCCGATCTTCACGGATCTCCTGCACGTGCTTGTATGGTGGGGCACCAAAAGCTCATCAGCTAAAAGAGTTAGACCGCGGAGCAGACATTGTTGTTGCTACACCTGGCCGTCTCAATGACATACTTGAAATGAAGAAAATCAACTTTGCGCAAGTCTCACTTCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATACCGCCACGTAGGCAAACTCTTATGTACACAGCAACATGGCCAAAAGAAGTACGGAAAATTGCCGGTGATCTCCTTGTTAATCCTGTCCAAGTTAATATTGGAAATGTTGATGAGCTTGCTGCAAACAAAGCTATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAAAGGCGTTTAGAGCAGATCATCAGGGCCCAAGAACGAGGTTCTAAGGTTATAATATTTTGTTCCACAAAGAGGTTATGTGATCAACTTGCCCGTAACATTGGCCGTAATTTTGGTGCTGCTGTAATCCATGGAGACAAATCTCAAGGTGAAAGAGACTGGGTTTTGAATCAGTTTAGGACTGGGAAGTCACCAATTCTTGTTGCCACTGATGTTGCTGCCCGGGGACTTGACATTAAGGATATAAGGGTTGTGATCAACTATGATTTCCCTACTGGAATTGAGGACTATGTACATCGTATTGGTCGAACAGGGAGGGCCGGAGCCACTGGAGTGTCATACACCTTTATCTCTGAGCAGGACTGGAAACATGCAGGTGACTTGATTAAAGTTTTGGAGGGTGCTAACCAGCTTGTGCCTCCCGAGTTGCGACAGATGGCTTTGCGTGGGCCATCAAACTTTGGAAAGGATCGGGGTGGAATGAGCCGTTTTGATACTGGTGGTGGCCGTTGGGAGTCTGGGGGCCGTGGTGGCATGAGAGATGGTGGGTTTGGTGGTCGTGGTGGCATGAGAGATGGTGGCTTTGTTAGCCGTGGTGGCATGAGGGATGGTGGTGGGTTTGGTGGTCGTGGTGGGATGAGGGACGGTCCAGGTGTGCAAGGTGTAAGAGGTGATTTCTTTCCTGGTAGGGGGGGCAACAGGGGTCGTGGAATGGGTGGTCCTCGTGGTGGTCATGTTGGCTGGGGTAGGGGTGAACGTGATTCCTATGATCGTTTCAACATGGATGGGCGAGGGCGTGGGCGTGGGCGTGGACGTTTTGACAACAGAAGAGATGTTGGTTACAGAAGCAGAGGCAGAAGTTACAGTCGCAGCCCTGAAAAGGTTCGAACATGGGATTATAGCAGAAGTCGCAGTAGAAGCAGAAGTGGAAGTCGAAGCAGGAGTAGGAGCTGGAGTAGGGGCCGCAGTCGAAGTCGCAGCTGGTCTCGTGGCCGCAGTCGCAGTTATAGCCGTAGCATCAGCCGGAGTCGGAGTCCCAGTCGCAGCCATGGCCGCAGGAGTGGAAGTTACAGCCGCAGTCGTAGTAGAAGCCGCAGCTATGATAGACATGATAAGCCAGATCAACATATTTCTGATCTGAACGAGCATAGAGCACAAGAAGCAGAAGCCTCTGAACCAAAAACATTCTCCATGTCTCCGAGGTCCCAGGGGAACTCACTTCTAGGAACTGAGCACGTGGAGCAGACCCCAGTTGTTAGTAACGCTGAGACAGTTAATTCAGGGGCTGTAGTAGAAGACCCTTGCCTTCAATCAGTTCCTAATGTCTAG 3453 0.4891 MATAEAAPAALGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNITQYEKPQPLPAGPPQSVSAPKLAPIPTAHKGQPGVVVSQQGQQLLQTSHQQGQQMSHLPQQHSPQVAQVGQQQPSQAAQAGQQQSSQQLQSMPQPGLQQVRQQQMLQPLSQQVPPQQMHHQMPQQAVQPQPFGQGVTQDHGSYMGQPQAHQFIHQNLHYMPYSQSMHSNGQQNSQPVQHNMHGQPLENQHEFKAAFPKIEDVDFKNGSQVGFSPSQYQQKNALPLQSNQNIPSGISSVQMSRVGVNAGQAQPFSAMSGGMQQPSQAMQSQQGSADLLYQHGHNFQNQMGPGMMHGQPSNVHPVDPKMGHEENLRGRAVNEYYHNSGKEMPTMGSQQPSIAPVPISRNQQAYQQDMRIGSSPFQNAMPGGNGLNGIPGHSMHNMFNPSIGGAPPVASNSLARPHVPDLSPAEIYCQQHEVTATGDNVPPPFMTFDAAGFPPEILREIYSAGFSTPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLIPAYMILRQRRNNPLNGPTVLVLAPTRELATQIQDEAIKFGRSSRISCTCLYGGAPKAHQLKELDRGADIVVATPGRLNDILEMKKINFAQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELAANKAITQYVEVVPQMEKQRRLEQIIRAQERGSKVIIFCSTKRLCDQLARNIGRNFGAAVIHGDKSQGERDWVLNQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFISEQDWKHAGDLIKVLEGANQLVPPELRQMALRGPSNFGKDRGGMSRFDTGGGRWESGGRGGMRDGGFGGRGGMRDGGFVSRGGMRDGGGFGGRGGMRDGPGVQGVRGDFFPGRGGNRGRGMGGPRGGHVGWGRGERDSYDRFNMDGRGRGRGRGRFDNRRDVGYRSRGRSYSRSPEKVRTWDYSRSRSRSRSGSRSRSRSWSRGRSRSRSWSRGRSRSYSRSISRSRSPSRSHGRRSGSYSRSRSRSRSYDRHDKPDQHISDLNEHRAQEAEASEPKTFSMSPRSQGNSLLGTEHVEQTPVVSNAETVNSGAVVEDPCLQSVPNV 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0774 1150 MobiDBLite consensus disorder prediction 1015 1039 - -
Acco04g0774 1150 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Acco04g0774 1150 MobiDBLite consensus disorder prediction 79 190 - -
Acco04g0774 1150 Pfam WW domain 22 52 IPR001202 GO:0005515
Acco04g0774 1150 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 628 636 IPR000629 -
Acco04g0774 1150 MobiDBLite consensus disorder prediction 49 190 - -
Acco04g0774 1150 MobiDBLite consensus disorder prediction 1100 1119 - -
Acco04g0774 1150 Pfam Helicase conserved C-terminal domain 708 816 IPR001650 -
Acco04g0774 1150 MobiDBLite consensus disorder prediction 1053 1067 - -
Acco04g0774 1150 SUPERFAMILY WW domain 14 53 IPR036020 GO:0005515
Acco04g0774 1150 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 711 855 IPR001650 -
Acco04g0774 1150 SMART helicmild6 732 816 IPR001650 -
Acco04g0774 1150 FunFam ATP-dependent RNA helicase RhlB 686 858 - -
Acco04g0774 1150 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 442 855 - -
Acco04g0774 1150 CDD SF2_C_DEAD 696 825 - -
Acco04g0774 1150 SMART ultradead3 496 699 IPR014001 -
Acco04g0774 1150 FunFam probable ATP-dependent RNA helicase DDX17 446 685 - -
Acco04g0774 1150 MobiDBLite consensus disorder prediction 1070 1098 - -
Acco04g0774 1150 Pfam DEAD/DEAH box helicase 501 671 IPR011545 GO:0003676|GO:0005524
Acco04g0774 1150 Gene3D - 687 857 IPR027417 -
Acco04g0774 1150 MobiDBLite consensus disorder prediction 955 1014 - -
Acco04g0774 1150 MobiDBLite consensus disorder prediction 1 27 - -
Acco04g0774 1150 SMART ww_5 21 54 IPR001202 GO:0005515
Acco04g0774 1150 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 508 682 IPR014001 -
Acco04g0774 1150 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 548 831 IPR027417 -
Acco04g0774 1150 MobiDBLite consensus disorder prediction 856 896 - -
Acco04g0774 1150 MobiDBLite consensus disorder prediction 934 1119 - -
Acco04g0774 1150 CDD WW 23 54 IPR001202 GO:0005515
Acco04g0774 1150 Gene3D - 454 686 IPR027417 -
Acco04g0774 1150 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Acco04g0774 1150 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 477 505 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0774 Acco-ChrAcco04 6610020 6617289 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0774 465 854 Eukaryotic Initiation Factors Gene Family AT3G19760 33.248 7.58e-66 226