Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0745 ATGGAACTGGACGACTGGGACCTGAGCGTAGAGGATCTTGATTCTCTCGAAAAAGACGCTTTCCAAAAGATTGCTCAACTACGCAATTCCTCTTGCTCCGCGTCTGTTTCTTCTTCCAACACTCAACAATTAAATGTACATCGACAACAATCTGCAAAACCTTGGGGCAACGACTTGGAACGATCTCCTGCAAAACCCATTTCTGATTCTCGTCATGAAAGAGTTGAAGCTTTGTCTCCCCAGTCTAGAGCGTTACCCTCGTCATTAAAATCAGGAACAAACAACGATGATCATTCAAAAGGAATGCCAAAGGTTTCTGTCAAACTGTTTCTTCATTCCAGCGGAGACATTGCAGCAAAGTTTCAATACAACCAGACAGTAATATCTGCTATAAGGAGAGTCCCCAAATCTACTTGGAACGCAAAAGAAAGGTTATGGATGTTCCCACTATCTTCCTTGTCAGCAGCAGAAAAGGTTCTTGCTGAAACTTCTAATGTTCAGGTTGATAACCTAGATTCTCTAGTGCATCGGGCCATTGCCACTGCATCTGTTGTTCCCGATCTTCGAGATCGGTATGACAAGATCCCTATCTACATTGAATCAAAACTTTTGCCATTTCAGCGAGAAGGGATTAGGTTTATATTGCAGCATGGAGGGCGGGCTCTTTTAGCTGATGAAATGGGACTAGGGAAAACTTTGCAGGCCATTGCTGTAACTACTTGCATTTCTGAGTCATGGCCTGTGCTCATACTCGCACCATCTTCATTACGGTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATGTACTTGTTGTGCTATCTCAAAGTGGTGGATCAAATAAAGGAGGCTTCACTATAGTATCTTCTAATACAAAAAGCAGCATCCATCTTGATGGAGTGTTCAACATCATCTCATATGATTTGGTTCCAAAGCTACAGAACATGCTTATGGCATCTGACTTTAAGGTTGTGATTGCAGATGAGTCACACTTTCTGAAAAATGCTCAAGCAAAGAGAACTACTGCTTCTCTTCCGGTTATAAAGAAAGCTCAATATGCAATATTGCTTAGTGGAACTCCTGCTTTGTCCCGACCAATTGAACTATTCAAGCAGCTGGAAGCACTGTATCCTGATGTTTATAGAAACGTCCATGAATATGGTAACAGATACTGCAAGGGTGGATTATTTGGACAATACCAAGGTGCAAGTAACCATGAAGAATTGCACAATTTGATTAAGGCAACAGTGATGATTCGAAGGCTTAAAAAGGACGTTCTTTCTCAACTTCCTGTAAAGCGCAGGCAACAGGTCTTCCTAGATTTGGATGCCAAGGATATGAAGCAAATCAATGCTTTATTTCGGGAGTTGGAGGTTGTTAAAGCTAAAATTAAGGCAGCCAAATCAAAGGAGGAGGCTGAAACGCTTAAGTTTTCTCAAAAGAATCTTATTAACAAGATATATACTGAATCTGCTGAAGCCAAGATCCCGGCAGTTCTTGATTATATTGGAACCGTTATTGAGGCAGGTTGCAAGTTTCTGATATTTGCACATCATCAGCCAATGATAGATTCAATACATGATTTTCTAATTAAAAAGAAGGTGGGTTGCATCCGCATTGATGGCAACACAGCCCCAGCATCGAGGCTAGCATTGGTCACAGATTTTCAGGAAAAGGATTCTATCAAGGCAGCTGTGCTATCTATCAAAGCTGGCGGAGTTGGGTTAACTTTAACTGCTGCAAGCACTGTCATTTTTGCAGAACTGTCCTGGACCCCAGGTGACCTAATTCAAGCAGAAGATCGTGCTCATAGAATTGGCCAGGTATCTTCAGTGAACATATACTACTTGCTAGCGACTGATACAGTCGATGACATCATATGGGATGTAGTGCAGAGCAAATTGGAAAATTTGGGACAGATGTTAGATGGCCATGAGAACAGCATGGAGGTTGCAGCCAATCAGCCAGGGAATAGCCCTGCAAAGCAGCAGACTCTTGACTGCTTTGTGAAAAGATGTAATAACATGGACGAGCCGGAACAACAGCCCGACCTGAAACGCCCCCGATATTGA 2088 0.4239 MELDDWDLSVEDLDSLEKDAFQKIAQLRNSSCSASVSSSNTQQLNVHRQQSAKPWGNDLERSPAKPISDSRHERVEALSPQSRALPSSLKSGTNNDDHSKGMPKVSVKLFLHSSGDIAAKFQYNQTVISAIRRVPKSTWNAKERLWMFPLSSLSAAEKVLAETSNVQVDNLDSLVHRAIATASVVPDLRDRYDKIPIYIESKLLPFQREGIRFILQHGGRALLADEMGLGKTLQAIAVTTCISESWPVLILAPSSLRLQWASMIQQWLNIPSSDVLVVLSQSGGSNKGGFTIVSSNTKSSIHLDGVFNIISYDLVPKLQNMLMASDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDVYRNVHEYGNRYCKGGLFGQYQGASNHEELHNLIKATVMIRRLKKDVLSQLPVKRRQQVFLDLDAKDMKQINALFRELEVVKAKIKAAKSKEEAETLKFSQKNLINKIYTESAEAKIPAVLDYIGTVIEAGCKFLIFAHHQPMIDSIHDFLIKKKVGCIRIDGNTAPASRLALVTDFQEKDSIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLATDTVDDIIWDVVQSKLENLGQMLDGHENSMEVAANQPGNSPAKQQTLDCFVKRCNNMDEPEQQPDLKRPRY 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0745 695 Coils Coil 455 475 - -
Acco04g0745 695 Coils Coil 640 660 - -
Acco04g0745 695 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 686 - -
Acco04g0745 695 MobiDBLite consensus disorder prediction 81 100 - -
Acco04g0745 695 SMART ultradead3 199 392 IPR014001 -
Acco04g0745 695 FunFam Chromatin remodeling factor18 176 450 - -
Acco04g0745 695 Pfam SNF2-related domain 221 483 IPR000330 GO:0005524|GO:0140658
Acco04g0745 695 MobiDBLite consensus disorder prediction 32 101 - -
Acco04g0745 695 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 426 IPR027417 -
Acco04g0745 695 Pfam Helicase conserved C-terminal domain 508 612 IPR001650 -
Acco04g0745 695 CDD DEXHc_HARP_SMARCAL1 203 426 - -
Acco04g0745 695 ProSiteProfiles HARP domain profile. 101 172 IPR010003 -
Acco04g0745 695 CDD SF2_C_SNF 499 623 - -
Acco04g0745 695 FunFam Chromatin remodeling factor18 461 691 - -
Acco04g0745 695 MobiDBLite consensus disorder prediction 32 56 - -
Acco04g0745 695 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 325 655 IPR027417 -
Acco04g0745 695 Gene3D - 181 432 IPR038718 -
Acco04g0745 695 SMART helicmild6 529 612 IPR001650 -
Acco04g0745 695 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 504 651 IPR001650 -
Acco04g0745 695 Gene3D - 465 689 IPR027417 -
Acco04g0745 695 MobiDBLite consensus disorder prediction 64 78 - -
Acco04g0745 695 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 212 384 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0745 Acco-ChrAcco04 6215927 6227857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0745 502 652 RAD5 or RAD16-like Gene Family AT1G11100 34.437 4.97e-17 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco04g0745 SNF2_N 1.4e-29 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g0745 04 6215927 6227857 Acco04g0745 04 6215927 6227857 ECH