Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0699 ATGGGGGCGAAAAGAAGCGCGAATTCTAGTGAAGCAGCTACGGGAAAGAAGATTAAGACGAAGGAGGCTGTGAACAATGAAAGCAAAGACGGCACTATTTTTGCCTCTTGCTCTTTCCCAAGCCTGGGACTGCATCCTACCATATGCGACGAGCTCCTTGGAAGAATGGGTTTTGAAGTTCCAACCTCTGTACAAGCCCAAGCCATTCCTGTTATTCTCTCAGGGCGTCATGTTCTTGTTAATGCTGCCACGGGCACCGGGAAGACTGTGGCATACTTGGCTCCGATTATTCACCATTTGCAGAACTTTGATAGTAGAATCCAACGGTCTGATGGAACATATGCGTTGGTTCTTGTGCCAACGCGGGAGCTATGTTTGCAGGTTTATGAAATTCTTCAAAAGTTATTGCATCGATTCCACTGGATTGTACCTGGATATGTAATGGGTGGTGAAAAGAGGTCAAAAGAAAAGGCCAGGTTGCGCAAAGGCATATCGATTCTTGTAGCAACTCCTGGGCGCCTTTTAGATCACTTGAAGAATACATCATCATTCTTGTACACCAATTTGCGTTGGATAGTCTTTGATGAAGCTGATAGGATTTTGGAATTAGGATTTGGAAAAGAAATAAAGGAAATACTAGATCATTTAGATACTAAAGCAGATTGTGCTAACCAAGAGAATGCAGTTTCAAGGCACTCTCGAGCTCTGAGACAGAATTTGCTCTTATCAGCTACTTTAAATGAAAAGGTGAATCATCTTGCTAAAATTAGTCTAGAGAATCCAGTGATGATTGGTATCGATGGCAAAGGGACAGAACCAATTTCAACAAACCTCAGTTCTTCAGAATCTGATGAGGAGAGTGAAGGCAATGAAGAGAAGTATCCCAGCAACATGCTGCATACACCTGCTGGAGATTATAAAGTTCCTACACAATTGATTCAGAGATATGTTAAAGTACCTTGCGGCGCTCGTCTTGCAGTTCTTCTTTCAATTTTGAAGTATCTTTCTGAAAGGGAAGCTTCACAAAAGATTGTGGTATTCTTTTCGACATGTGATGCAGTAGACTTTCACTTTTTACTGTTAAGTGAATTCCAGTTTTCTTATCCACAATCAGAAGCAGATGCCAGACAGATTTTTCTGGGGGGCAAAGTGTTTCGTTTGCATGGGAACATGGACCAGGAGGACCGGAGGAAAACTTTTCAGACGTTTAAAACAGAGAAATCAGCTCTGCTGTTTTCCACTGATGTAGCTGCTAGAGGACTGGATTTTCCGAAAGTCAGATGCATTATACAATATGATTCTCCAGGGGAAGCCACCGAATATGTGCATAGAGTTGGTAGAACTGCTCGGCTAGGTGAAAGAGGAGAGTCACTGTTATTTCTGCAGCCAGTTGAAATTGATTATTTACAGGACTTGGAAAAACACGGTGCATCGCTAACAGAGTATCCTCTCCTCAAAGTGTTGGATAGTTTCCCACTAAATGGTCAAAAGAAGCACACCAAGAATTTTGTTGCCATAGAGTCACATCCCTGGGTCCTTTTTCTCCAGAATGCACTTGAATCCTTCATCACATCTAAGCCCAAAATTGATAAACTTGCCAAGAAGGGATTTTGCTCTTGGGTCCGTGCCTACACAACCCATCGTGGTGAGTTGAAAAAGATATTTATGATCAAGAAACTCCACTTGGGGCATGTAGCAAAAAGCTTTGCACTTAAACAACAACCTTCCTTAGTTGCAAAGTCATACAAGAAGCAAGCCAAGAGGAAGAGGTTTCAGAAGCCAATCGGGCTGGCTAAAAAGAGAAAGATCACCGGGGTGACATAA 1824 0.4243 MGAKRSANSSEAATGKKIKTKEAVNNESKDGTIFASCSFPSLGLHPTICDELLGRMGFEVPTSVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIHHLQNFDSRIQRSDGTYALVLVPTRELCLQVYEILQKLLHRFHWIVPGYVMGGEKRSKEKARLRKGISILVATPGRLLDHLKNTSSFLYTNLRWIVFDEADRILELGFGKEIKEILDHLDTKADCANQENAVSRHSRALRQNLLLSATLNEKVNHLAKISLENPVMIGIDGKGTEPISTNLSSSESDEESEGNEEKYPSNMLHTPAGDYKVPTQLIQRYVKVPCGARLAVLLSILKYLSEREASQKIVVFFSTCDAVDFHFLLLSEFQFSYPQSEADARQIFLGGKVFRLHGNMDQEDRRKTFQTFKTEKSALLFSTDVAARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLEKHGASLTEYPLLKVLDSFPLNGQKKHTKNFVAIESHPWVLFLQNALESFITSKPKIDKLAKKGFCSWVRAYTTHRGELKKIFMIKKLHLGHVAKSFALKQQPSLVAKSYKKQAKRKRFQKPIGLAKKRKITGVT 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0699 607 PANTHER RNA HELICASE 25 524 - -
Acco04g0699 607 MobiDBLite consensus disorder prediction 271 300 - -
Acco04g0699 607 Gene3D - 323 600 IPR027417 -
Acco04g0699 607 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 66 IPR014014 GO:0003724
Acco04g0699 607 FunFam RNA helicase 3 266 - -
Acco04g0699 607 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 193 201 IPR000629 -
Acco04g0699 607 Pfam Domain of unknown function (DUF4217) 516 576 IPR025313 -
Acco04g0699 607 MobiDBLite consensus disorder prediction 1 21 - -
Acco04g0699 607 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 327 499 IPR001650 -
Acco04g0699 607 SMART DUF4217_3 514 579 IPR025313 -
Acco04g0699 607 SMART ultradead3 57 277 IPR014001 -
Acco04g0699 607 Pfam DEAD/DEAH box helicase 62 252 IPR011545 GO:0003676|GO:0005524
Acco04g0699 607 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 69 264 IPR014001 -
Acco04g0699 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 265 IPR027417 -
Acco04g0699 607 CDD SF2_C_DEAD 312 461 - -
Acco04g0699 607 CDD DEADc_DDX31 50 265 - -
Acco04g0699 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 480 IPR027417 -
Acco04g0699 607 Pfam Helicase conserved C-terminal domain 330 452 IPR001650 -
Acco04g0699 607 Gene3D - 3 267 IPR027417 -
Acco04g0699 607 SMART helicmild6 370 452 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0699 Acco-ChrAcco04 5730137 5734702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0699 27 484 Eukaryotic Initiation Factors Gene Family AT3G19760 26.293 4.41e-31 124