Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0622 ATGAACAGTTCAGAGAATTCGAGCGGCGAAGAGACTGATCAATTTGAAGATGGAGATTCAAGAGAAACAAAACGATCTTATGAGTGCACATTTTGTAAAAGGGGCTTCACCAACGCTCAGGCATTAGGAGGTCATATGAATATCCATAGAAAAGACAGAGCCAACAACAAGGCCAAACAAATCACACCTCATAATAATTCTTCTTCTTCTCTTTCAAACAGACTTTCCATTGAGGATTATTCCTTTGGTTCAGCCTCACCTTTTCTTTCAGAAATATCTTCATCATCAGGCCAACAATCCTCAAAGTTTTACTCCATTTTCGAGGTTCATCAGGGAAATAACTATAACATGTATTACCCACCATCTTCGGCAACAACAAACCCTAGAAACGCTTATCCTGCTTCATCATATGCCTTTCCCTTTGAGTATCTTAATCCAAGGTCTCATCATCATCGTCATCAGTCTGCAGATGTGAACCAAGAGCTTCTTGGCGCCAATTTGAGTCTCCAGATTGGCCCACCAAGTCATGTGGAAAGTAATCAGGAAGATGGTGAAGTGGACTTAGAGCTCAGACTTGGCCATCATCCATATTGA 594 0.4108 MNSSENSSGEETDQFEDGDSRETKRSYECTFCKRGFTNAQALGGHMNIHRKDRANNKAKQITPHNNSSSSLSNRLSIEDYSFGSASPFLSEISSSSGQQSSKFYSIFEVHQGNNYNMYYPPSSATTNPRNAYPASSYAFPFEYLNPRSHHHRHQSADVNQELLGANLSLQIGPPSHVESNQEDGEVDLELRLGHHPY 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0622 197 Gene3D Classic Zinc Finger 5 81 - -
Acco04g0622 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
Acco04g0622 197 PANTHER OS07G0101800 PROTEIN 2 195 - -
Acco04g0622 197 MobiDBLite consensus disorder prediction 175 197 - -
Acco04g0622 197 MobiDBLite consensus disorder prediction 180 197 - -
Acco04g0622 197 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Acco04g0622 197 SMART c2h2final6 27 49 IPR013087 -
Acco04g0622 197 MobiDBLite consensus disorder prediction 1 23 - -
Acco04g0622 197 SUPERFAMILY beta-beta-alpha zinc fingers 24 53 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0622 Acco-ChrAcco04 4876059 4876652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0622 27 72 C2H2 Transcription Factor Family AT5G43540 71.739 3.84e-16 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco04g0622 None None None