Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0611 ATGGATCTTGCAGGAAGGAGATTCTTAATTTCTGGGTCACACCCACTTTCGCCATTACCAAGCCCAGTGACTTCAATCCTTCGCCCACATTCACATTCTGCGAATACCAGTTTCCCCATTATAGCTATCGCTATAATAGGAATACTAGCCACAGCTTTCTTGCTCGTTAGCTACTATATCTTCGTCATCAAATGCTGCCTCAATTGGCACCGCATAGATCTACTTCGACGATTCTCTCCGTCCCGGCGGCGAGAAGAGCCGCCGATGACATACTCGCTGCCGGGCACAGAGCCTCGAGGACTCGACGAGGCGGTGATCCGACTAATCCCAGTCATCCATTACAAAACAGAGGAAAACAGAGAATCCGGAGAGCGAAGCTTCACGGAATGCTCTGTTTGCTTGAACGAGTTTCGCGAGAAGGAGAAGCTGAGGATTATACCGAATTGCGGCCATGTCTTTCACATAGATTGTATCGATGTTTGGCTTCAGAACAATGCTAATTGCCCACTTTGCAGAACCAGCATTTCTCTTTCAAGCAGATTCCAAATAGATCAGATTCTAAATCTCAGAACCCCCTCACAAGATCGACGCCTGCACGGCGAAAATATCACCGGAGGCGATGAAGATTTCGTCGTGATTGAACTGAGCACAAATGGCCGCAATAGAGACCAGAACTGGAACAGAACACAGGAAAGAGAACACCCACCACGAGAGGTGAGTCCTTCGCCTATTGAGAAAAAACAATGGAAGTTTCAGAAAGTGACGAGCATGGGAGATGAGTGCATCGATACTAGAGGTAAAGACGAGATTTTTTCAGTACAGCCGATAAGGAGGTCGTTTTCCATGGATTCTTCAGGGGATAGGCAGTTGTACATGGCAGTTCAAGAAGCTTTGAAGAAACAGAACAGGCAAGAAGTGAGTGAGGTATCATCGTCCTCCATGGATGGTTGTAGTAGTAGTAGTAATAGTGGTAAAGTAAAGAGGTTATTTTTTTCCTTCGGACATGGTAGTAGTAGATCCAGAAGTTCGGTCCTACCTGTTTCTATGGACCACTAA 1056 0.4631 MDLAGRRFLISGSHPLSPLPSPVTSILRPHSHSANTSFPIIAIAIIGILATAFLLVSYYIFVIKCCLNWHRIDLLRRFSPSRRREEPPMTYSLPGTEPRGLDEAVIRLIPVIHYKTEENRESGERSFTECSVCLNEFREKEKLRIIPNCGHVFHIDCIDVWLQNNANCPLCRTSISLSSRFQIDQILNLRTPSQDRRLHGENITGGDEDFVVIELSTNGRNRDQNWNRTQEREHPPREVSPSPIEKKQWKFQKVTSMGDECIDTRGKDEIFSVQPIRRSFSMDSSGDRQLYMAVQEALKKQNRQEVSEVSSSSMDGCSSSSNSGKVKRLFFSFGHGSSRSRSSVLPVSMDH 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0611 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 177 IPR013083 -
Acco04g0611 351 SMART ring_2 130 171 IPR001841 -
Acco04g0611 351 SUPERFAMILY RING/U-box 129 178 - -
Acco04g0611 351 PANTHER RING-H2 FINGER PROTEIN ATL16 22 347 IPR044600 GO:0016567|GO:0016740
Acco04g0611 351 Pfam Ring finger domain 129 172 IPR001841 -
Acco04g0611 351 CDD RING-H2_EL5-like 129 172 - -
Acco04g0611 351 MobiDBLite consensus disorder prediction 221 247 - -
Acco04g0611 351 MobiDBLite consensus disorder prediction 304 324 - -
Acco04g0611 351 MobiDBLite consensus disorder prediction 225 244 - -
Acco04g0611 351 FunFam E3 ubiquitin-protein ligase ATL6 92 178 - -
Acco04g0611 351 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0611 Acco-ChrAcco04 4751126 4752181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0611 29 350 C3H Transcription Factor Family AT1G04360 53.239 2.60e-108 320