LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco04g0610	ATGGAGGCAGATGGGTCGGGATCTAGAAGGGCCAAGGACGCGGAAGGCGGCGGAGATGTCAGGTACAGGGGAGTGAGGCGGCGGCCATGGGGGAAGTTCGCGGCTGAGATCCGGGACTCGTCCAGGCAGGGCCAGAGGGTGTGGTTGGGGACTTTCAACACGGCGGAGGATGCCGCCAGGGCCTACGACCGAGCTGCTTATGCCATGAGAGGCCCATTTGCTATCCTCAACTTCCCTGATGAATACCCACTCTCGGCCGGCGGTGCTGACGCCATGGCCGACCGTCGTTCCCCGCCGAGCAGTAATGTGCATGAAAAACAAGTGTTCGAGTTCGAGTACTTGGACGATAAATTGCTGGAGGAGCTTCTTGATTCTGAAGAGAACAAGATGACGGGAAATTGA	402	0.5846	MEADGSGSRRAKDAEGGGDVRYRGVRRRPWGKFAAEIRDSSRQGQRVWLGTFNTAEDAARAYDRAAYAMRGPFAILNFPDEYPLSAGGADAMADRRSPPSSNVHEKQVFEFEYLDDKLLEELLDSEENKMTGN	133

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco04g0610	133	SUPERFAMILY	DNA-binding domain	21	81	IPR016177	GO:0003677
	Acco04g0610	133	PRINTS	Ethylene responsive element binding protein signature	22	33	IPR001471	GO:0003700\|GO:0006355
	Acco04g0610	133	PRINTS	Ethylene responsive element binding protein signature	45	61	IPR001471	GO:0003700\|GO:0006355
	Acco04g0610	133	ProSiteProfiles	AP2/ERF domain profile.	21	79	IPR001471	GO:0003700\|GO:0006355
	Acco04g0610	133	MobiDBLite	consensus disorder prediction	1	22	-	-
	Acco04g0610	133	SMART	rav1_2	21	85	IPR001471	GO:0003700\|GO:0006355
	Acco04g0610	133	PANTHER	DNA-BINDING DOMAIN	13	126	IPR044808	GO:0003700\|GO:0009873
	Acco04g0610	133	Pfam	AP2 domain	21	71	IPR001471	GO:0003700\|GO:0006355
	Acco04g0610	133	Gene3D	AP2/ERF domain	20	80	IPR036955	GO:0003700\|GO:0006355
	Acco04g0610	133	FunFam	Ethylene-responsive transcription factor 2	21	80	-	-
	Acco04g0610	133	CDD	AP2	21	80	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco04g0610	Acco-ChrAcco04	4744058	4744459	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco04g0610	21	129	AP2-EREBP Transcription Factor Family	AT3G23230	60.000	1.15e-42	135

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco04g0610		AP2	6.3e-16	CL0081