LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco04g0609	ATGGATGGGCACAAGGGAAAGCAGGAAAAGGCGAAGGATGAGGCGCGGTACCGGGGTGTGAGGAGGCGGCCGTGGGGGAAGTACGCTGCTGAGATTAGGGATCCGTCGAAGCAAGGGGCGAGGCTATGGCTGGGGACGTTTGATACGGCGGAAGAAGCAGCCAGGGCCTATGATAGGGCTGCCTTCAACATGAGGGGTCACCTCGCAATCCTTAATTTCCCTAATGAGTATTATGCTCAACTGAGGCCCCCACCATATAATCGCTTCTTTGTGCCTCCTCCGCCACTGTCTCGCGGTCATAGTGGTGCAGGCTCATCGTCTGGTTCGCAAGTTTTTGAGTTTGAGTATCTAGATAATCAGGTGCTTGAAGATCTGCTTGAATCAGAAGAGGAGAAAAAGAAAAAGATGTGA	411	0.5255	MDGHKGKQEKAKDEARYRGVRRRPWGKYAAEIRDPSKQGARLWLGTFDTAEEAARAYDRAAFNMRGHLAILNFPNEYYAQLRPPPYNRFFVPPPPLSRGHSGAGSSSGSQVFEFEYLDNQVLEDLLESEEEKKKKM	136

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco04g0609	136	SMART	rav1_2	16	80	IPR001471	GO:0003700\|GO:0006355
	Acco04g0609	136	CDD	AP2	15	75	IPR001471	GO:0003700\|GO:0006355
	Acco04g0609	136	PRINTS	Ethylene responsive element binding protein signature	17	28	IPR001471	GO:0003700\|GO:0006355
	Acco04g0609	136	PRINTS	Ethylene responsive element binding protein signature	40	56	IPR001471	GO:0003700\|GO:0006355
	Acco04g0609	136	ProSiteProfiles	AP2/ERF domain profile.	16	74	IPR001471	GO:0003700\|GO:0006355
	Acco04g0609	136	PANTHER	DNA-BINDING DOMAIN	8	130	IPR044808	GO:0003700\|GO:0009873
	Acco04g0609	136	Pfam	AP2 domain	16	67	IPR001471	GO:0003700\|GO:0006355
	Acco04g0609	136	SUPERFAMILY	DNA-binding domain	16	75	IPR016177	GO:0003677
	Acco04g0609	136	Gene3D	AP2/ERF domain	15	76	IPR036955	GO:0003700\|GO:0006355
	Acco04g0609	136	Coils	Coil	119	136	-	-
	Acco04g0609	136	FunFam	Ethylene-responsive transcription factor 2	15	75	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco04g0609	Acco-ChrAcco04	4717453	4717863	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco04g0609	14	133	AP2-EREBP Transcription Factor Family	AT3G23230	62.903	3.79e-49	152

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco04g0609		AP2	4.9e-17	CL0081