LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco04g0607	ATGGACTCTTCTTTCTCCGTCTTCCACTCTTCCACCTCCGAATTCTCCTCCGATTCCTCCTTGGCCTCATCCGATTCCTTCTTCTCCTACAACTTCCCCACCTCCTACCTCCCCTTTAATGAGAATGACCCCGACGAGATGCTTCTCTACGGCATGATTTCCGAGGCCAACCACAATGATGGCCCTGACGAATCTTTCAATTCCGTCAAGGAGGAGGAGGTCAGCTCTGAAGCCTCTGCTTCCGCCGCCGCCGCCGCCGCAGCCGCCACCTTTAAGGAGAAGAACTACAGAGGCGTGCGGCGGCGCCCATGGGGGAAATTCGCGGCGGAGATAAGGGATTCCACCAGGCACGGCATAAGGGTGTGGCTGGGAACCTTCGATAGCGCAGAGGCGGCGGCTTTAGCCTACGATCAAGCCGCGTTTTCCATGAGGGGATCGGCGGCGATACTGAACTTCCCGGCGGAGAGGGTGAGGGAGTCTCTGAAAGAGATGAACTACGGATCGGAAGAAGGCTGCTCGCCGGTGGTGGCTCTGAAGAGAAAGCACTCGTTGAGAAGAAAAGTGAATAGTAACAAGAAGAAGAACAAGGCAGAGAGCAGAGACATGAGAATAGACAGTGTGGTGGTGCTGGAAGATCTGGGCTCAGATTACTTGGAACAACTCTTGATGTCCTCGGAGAATCCTAGGCCTTCAGAATCTCAATGCCTCAATGTTCATTAA	720	0.5417	MDSSFSVFHSSTSEFSSDSSLASSDSFFSYNFPTSYLPFNENDPDEMLLYGMISEANHNDGPDESFNSVKEEEVSSEASASAAAAAAAATFKEKNYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSAAILNFPAERVRESLKEMNYGSEEGCSPVVALKRKHSLRRKVNSNKKKNKAESRDMRIDSVVVLEDLGSDYLEQLLMSSENPRPSESQCLNVH	239

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco04g0607	239	Gene3D	AP2/ERF domain	94	154	IPR036955	GO:0003700\|GO:0006355
	Acco04g0607	239	SMART	rav1_2	95	159	IPR001471	GO:0003700\|GO:0006355
	Acco04g0607	239	PRINTS	Ethylene responsive element binding protein signature	119	135	IPR001471	GO:0003700\|GO:0006355
	Acco04g0607	239	PRINTS	Ethylene responsive element binding protein signature	96	107	IPR001471	GO:0003700\|GO:0006355
	Acco04g0607	239	FunFam	Ethylene-responsive transcription factor 2	94	155	-	-
	Acco04g0607	239	Pfam	AP2 domain	95	145	IPR001471	GO:0003700\|GO:0006355
	Acco04g0607	239	PANTHER	DNA-BINDING DOMAIN	61	225	IPR044808	GO:0003700\|GO:0009873
	Acco04g0607	239	MobiDBLite	consensus disorder prediction	1	23	-	-
	Acco04g0607	239	SUPERFAMILY	DNA-binding domain	95	154	IPR016177	GO:0003677
	Acco04g0607	239	CDD	AP2	94	154	IPR001471	GO:0003700\|GO:0006355
	Acco04g0607	239	ProSiteProfiles	AP2/ERF domain profile.	95	153	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco04g0607	Acco-ChrAcco04	4664746	4665465	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco04g0607	37	227	AP2-EREBP Transcription Factor Family	AT3G23240	61.458	6.74e-78	232

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco04g0607		AP2	7.2e-15	CL0081