Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0587 ATGGTGAGAGCTCCATGCTGTGACAAGATGGGACTGAAGAAGGGTCCTTGGACTCCTGAGGAAGACCAACTATTGGTCTCTTACATTAACAAATATGGTCATGGCAATTGGCGAGCCCTCCCTAAGCAAGCAGGTCTTTTAAGATGCGGCAAGAGTTGCAGACTGAGGTGGATCAATTATTTGAGGCCAGATATAAAGAGAGGAAACTTCACAGCCGAAGAAGAAGAAACCATCATTAAGCTTCATGACAAGCTTGGCAGCAGGTGGGCAACAATTGCGGCAAAATTACCAGGAAGAACAGACAATGAGATCAAAAATGTGTGGCATACCCACTTGAAGAAGAGGCTTCAAAAAACAAATGATCAAGCTCATCAAGCCATTCTTAATTCAGGTTCCAAAACCAGAGGCTCCATTGATAATAATAAAGCTTCAATCAAACAATCTGTTTCAAATTCCAGCACTTTGACAAGTCAATCAGAAGCTGCAAGTTTCATCACTTCATCCTCCTCCACTTCTAGTGATTGTGGGCAGAGTCTGAAAGTCGCCATTGAGCGTGAAGACATAGATTCATCTTCTCTTGATGAGTCTTATGGGTTGCCTCAGATTGATGAAAGCTTTTGGACAGAAGCAGCCATGCAGTATGATGATAATAGCAGCAGCACCATTAATATTCAGAATCATAATGAAATATTTCCAGTTCATCATCAATACCCATGTGATGATGGAATGGATTTCTGGTATGATGTGTTCAGATCAGGGGATTTTCCTGAGTTGACGTTCTGA 783 0.4189 MVRAPCCDKMGLKKGPWTPEEDQLLVSYINKYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTAEEEETIIKLHDKLGSRWATIAAKLPGRTDNEIKNVWHTHLKKRLQKTNDQAHQAILNSGSKTRGSIDNNKASIKQSVSNSSTLTSQSEAASFITSSSSTSSDCGQSLKVAIEREDIDSSSLDESYGLPQIDESFWTEAAMQYDDNSSSTINIQNHNEIFPVHHQYPCDDGMDFWYDVFRSGDFPELTF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0587 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Acco04g0587 260 CDD SANT 69 112 IPR001005 -
Acco04g0587 260 Gene3D - 13 66 - -
Acco04g0587 260 CDD SANT 16 61 IPR001005 -
Acco04g0587 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Acco04g0587 260 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Acco04g0587 260 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Acco04g0587 260 FunFam MYB-related transcription factor 13 66 - -
Acco04g0587 260 SMART sant 13 63 IPR001005 -
Acco04g0587 260 SMART sant 66 114 IPR001005 -
Acco04g0587 260 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Acco04g0587 260 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Acco04g0587 260 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 217 - -
Acco04g0587 260 Gene3D - 69 145 - -
Acco04g0587 260 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0587 Acco-ChrAcco04 4498981 4500540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0587 1 258 MYB Transcription Factor Family AT2G31180 46.931 8.12e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco04g0587 Myb_DNA-binding 6.7e-16 CL0123