Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco04g0580 | ATGATCAAACTGACGCAGCTCCATTGCCACGTGGCAGTGACGTTTAATGGAATGGCAGATCTTGATGGCAATGTAAATGTTGAGCAAGCACTTATTGCTTTGAAAAAAGGCACTCAGTTAATTAAGTATAGTCGGAAAGGAAAGCCAAAACTTTGTCCATTCAGACTCTCACCGGATGAAACAACATTGATCTGGATAAGTCAAAGAGGGGAAAGAAATCTGAATTTGTCTTGTGTTTCACAGATAATCGCTGGACAGAGAACGGCTGTCTTTAGAAGATATTTGTGTCCTGAAAAGGATTCTCTATCATTTTCTCTTCTTCATAGAAACTCTGAACGTTCACTTAATCTGAATTGTAAGGATAAAGCTGAAGCCGATGTATGGTTTACAGGCCTCCAGGCATTAATATCTCCTGGACGACGTCACAGGCATAGGCATACCAGAAGTGACTTTTCTAATCTGCAAGGGAGCATTGACTTTACTCATGATAGTCATCCTTTTAGTGCAACGGTAAAGTATCCTTCAAGCAGCCCTCATGGTCGAGTTTCCATTGATTCAGTTTCTCGTGACACTTCATTGAATTGGGTAAACTCAGATGTGGGGTTAGAACGTGTAAATATGCAATTGAGGGGAGGAGCTGGAGACAATTTCCGTCTTAGTGTGTCAAGTGCAGGATCTGGAATAGATGACATAGAATCACTTGGAGATGTTTATGTATGGGGAGAGGTTTGGGCAGATGGGGTTTCATCTGATGGACTGGGGAATCAAGTCCCTGTGAAGACAGACGTCTTGATTCCCAAATCATTAGAGTCAAATGTTGTTCTTGATGTTCAACAGATTGCATCTGGCGTCCGCCATACCGCGCTAGTTACAAGGCAAGGAGAGCTTTTTACTTGGGGAGAAGAATCTGGGGGAAGACTTGGTCATGGGATTGATAAAGACTTTAGCCGCCCTCGTCTGGTTGAATTCCTGGCAGTCACTAACGTGGAATTTGTAGAGTGTGGAGAGTATCATACATGTGCTGTATCTACATCCGGTGATTTATTCTCTTGGGGTGATGGTACCCACGGTGCTGGACTTCTTGGTCATGGAAATGACATTAGTCACTGGATACCAAAGAGAATCATAGGCCCTTTAGAAGGACTTCAAGTTATATCTGTTGCATGTGGCACGTGGCATTCAGCATTGGCAACCTCCAATGGGAAATTGTTTACATTTGGTGATGGAGCTTTTGGTGTCTTGGGCCATGGAGATGTACAAAGTGTGCCATATCCAAAGGAGGTGCAATCATTGAGCGGACTAAAGACCGTTAAGGTTGCATGTGGACTGTGGCACACGGCAGCTATTGTAGAGGTTATGGGCCAAACTGGTTCAAATGTCTCATCTAGGAAGCTCTTTACTTGGGGTGATGGTGACAAATATCGTTTGGGTCATGGTAACAAGGAAACTTACCTTCAACCCACCTGTGTCTCTGCACTCATTGAATACAATTTCCAACAGGTAGCATGTGGGCACATTTTGACAGTCGCCCTCACTACAGCAGGTCAAGTCTTCACTATAGGAGGCACAGCATATGGTCAACTAGGGAATCCTCTCTCTGATGGAAAATCACCTATCATGGTACAAGATAAGCTGGTTGGTGAATTTGTTGAGGAAATAGCGTGCGGAGAACACCATGTTGCTGCCTTGACGTCAAGAAGTGAACTATATACTTGGGGGAAAGGTGCCAATGGAAGATTGGGACATGGAGACACACACGATCGAAAATCTCCTGTGTTGGTTGAATGCTTGAAAGATAGGCACGTAAAAAGTATCTCATGTGGCTCAAACTTCATGACTTGTATTTGCATCCATAAATGGGTCTCTGGAGTTGACCAATCTGTTTGCTCTGGCTGCCGGCAAGCATTTGGTTTTACTAGAAAAAGGCACAATTGTTATCATTGCGGATTAGTGCATTGTCATTCTTGTAGCTCTAAGAAGGCATTGAAAGCAGCATTAGCTCCAACGCCCGGAAAACCACATCGTGTCTGTGATGCATGTTATGCAAAACTTAAAACTGCTGAGATCGGCCATGCTTCCACTTTTAGCAGAGGAACTACGCCTCCACGTAGATCCATAGAATGGGCAGAGGCAAAGTCTTCAAGAGTATTCTTATCTCCCATCACAGAACCTGTAAAATACCTTGAGATAAGGACTAATAAACCAGGAACTAGATCTGATTCCTCTTCCATAGTTCGAGCTTCTCAAGTTCCATCTCGTTTGCAGTTAAAAGATGTTGCATTTCCAAGTTCACTGAGCACCATTCAGAATGCTTTCAAGCCTGTTGTTATACCTCCTAGCTCACCACGAACCCCACGTGCCAATTCTAGATCATCATCACCATATGCAAGAAGACCCAGCCCACCTCGTTCACCCGTTCCCGGATTTTCTAAAAGTATTATAGACAGTTTGAGGAGGACCAATGACATTTTGAATCAAGAAGTCTCGAAAATGCATAGACAAATTCGAAGTTTGAAGCAGAAGAACGAAACACAAGATAAGGAGATACAGAAGCTTCAGAAAAATGTTGAGGAAGCCACCTCATTGGCTGGGGAGATATATTCCAAGCATCAAGTAGCAAATGAATTTATCAAGTCCATAAAAGATCTGCTGAAGGAAATGACCGACAAGCTGCCACTAGAGGTTTCTGGCTGTAATAGCTTGAAAATCATGCACGACCAAGCAGAAGATTTTCTAAGAAAAATTGCAGAATCTGAAACTCCTTCCTCTTTACCATCAAACTTACAGTCTGATCAACTAAATGCAACTACTGATATAACTGCTTCACATGGCGACATTGCTAAACCACGAGAACTAAAACCGGAGGACAATAAAGATGCTGCAGGAATCGATTCATCTCAAGATGGTGGAAAAGTTCAAGAAAGTAATGGACCGTCTACTTCTTCTGGAGGAGCAGCAGTGCATCCACAAAGTTCAGAACATGGTTCAGGCCCACTGAACTCTTCAAGACCTAGGATTGAAGAAGAAACAGAAACCAATGAAGAATTTGCACCCGGAGTGTTCGTGACAGTCATAGTGCGGCCTGGTGGTAATAAAATTTTCAAACGAGTTAGATTCAGCAAGCGAAGGTTCGATGAACAACAGGCAGAAGAATGGTGGAGCAAAAACAAAGATAAGGTGGTTAGGACATATAATCCATCAGCAACAAATTCTGCAGCTACAGGGCCATCCACATAG | 3237 | 0.4319 | MIKLTQLHCHVAVTFNGMADLDGNVNVEQALIALKKGTQLIKYSRKGKPKLCPFRLSPDETTLIWISQRGERNLNLSCVSQIIAGQRTAVFRRYLCPEKDSLSFSLLHRNSERSLNLNCKDKAEADVWFTGLQALISPGRRHRHRHTRSDFSNLQGSIDFTHDSHPFSATVKYPSSSPHGRVSIDSVSRDTSLNWVNSDVGLERVNMQLRGGAGDNFRLSVSSAGSGIDDIESLGDVYVWGEVWADGVSSDGLGNQVPVKTDVLIPKSLESNVVLDVQQIASGVRHTALVTRQGELFTWGEESGGRLGHGIDKDFSRPRLVEFLAVTNVEFVECGEYHTCAVSTSGDLFSWGDGTHGAGLLGHGNDISHWIPKRIIGPLEGLQVISVACGTWHSALATSNGKLFTFGDGAFGVLGHGDVQSVPYPKEVQSLSGLKTVKVACGLWHTAAIVEVMGQTGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFQQVACGHILTVALTTAGQVFTIGGTAYGQLGNPLSDGKSPIMVQDKLVGEFVEEIACGEHHVAALTSRSELYTWGKGANGRLGHGDTHDRKSPVLVECLKDRHVKSISCGSNFMTCICIHKWVSGVDQSVCSGCRQAFGFTRKRHNCYHCGLVHCHSCSSKKALKAALAPTPGKPHRVCDACYAKLKTAEIGHASTFSRGTTPPRRSIEWAEAKSSRVFLSPITEPVKYLEIRTNKPGTRSDSSSIVRASQVPSRLQLKDVAFPSSLSTIQNAFKPVVIPPSSPRTPRANSRSSSPYARRPSPPRSPVPGFSKSIIDSLRRTNDILNQEVSKMHRQIRSLKQKNETQDKEIQKLQKNVEEATSLAGEIYSKHQVANEFIKSIKDLLKEMTDKLPLEVSGCNSLKIMHDQAEDFLRKIAESETPSSLPSNLQSDQLNATTDITASHGDIAKPRELKPEDNKDAAGIDSSQDGGKVQESNGPSTSSGGAAVHPQSSEHGSGPLNSSRPRIEEETETNEEFAPGVFVTVIVRPGGNKIFKRVRFSKRRFDEQQAEEWWSKNKDKVVRTYNPSATNSAATGPST | 1078 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco04g0580 | 1078 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 401 | 452 | IPR000408 | - | |
| Acco04g0580 | 1078 | MobiDBLite | consensus disorder prediction | 944 | 962 | - | - | |
| Acco04g0580 | 1078 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1010 | 1064 | IPR013591 | - | |
| Acco04g0580 | 1078 | MobiDBLite | consensus disorder prediction | 941 | 1014 | - | - | |
| Acco04g0580 | 1078 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 400 | 449 | IPR000408 | - | |
| Acco04g0580 | 1078 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 294 | 342 | IPR000408 | - | |
| Acco04g0580 | 1078 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 515 | 563 | IPR000408 | - | |
| Acco04g0580 | 1078 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 465 | 511 | IPR000408 | - | |
| Acco04g0580 | 1078 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 568 | 615 | IPR000408 | - | |
| Acco04g0580 | 1078 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 345 | 396 | IPR000408 | - | |
| Acco04g0580 | 1078 | MobiDBLite | consensus disorder prediction | 968 | 999 | - | - | |
| Acco04g0580 | 1078 | SUPERFAMILY | PH domain-like | 27 | 136 | - | - | |
| Acco04g0580 | 1078 | Gene3D | - | 23 | 145 | IPR011993 | - | |
| Acco04g0580 | 1078 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 463 | 514 | IPR000408 | - | |
| Acco04g0580 | 1078 | MobiDBLite | consensus disorder prediction | 782 | 797 | - | - | |
| Acco04g0580 | 1078 | Pfam | FYVE zinc finger | 619 | 685 | IPR000306 | GO:0046872 | |
| Acco04g0580 | 1078 | SUPERFAMILY | RCC1/BLIP-II | 234 | 620 | IPR009091 | - | |
| Acco04g0580 | 1078 | SMART | fyve_4 | 617 | 686 | IPR000306 | GO:0046872 | |
| Acco04g0580 | 1078 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 346 | 400 | IPR000408 | - | |
| Acco04g0580 | 1078 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 280 | 290 | IPR000408 | - | |
| Acco04g0580 | 1078 | Gene3D | - | 212 | 457 | IPR009091 | - | |
| Acco04g0580 | 1078 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 439 | 449 | IPR000408 | - | |
| Acco04g0580 | 1078 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 72 | 885 | - | - | |
| Acco04g0580 | 1078 | Coils | Coil | 814 | 862 | - | - | |
| Acco04g0580 | 1078 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 623 | 685 | IPR017455 | - | |
| Acco04g0580 | 1078 | CDD | PH_PLC_plant-like | 27 | 137 | - | - | |
| Acco04g0580 | 1078 | ProSiteProfiles | BRX domain profile. | 1010 | 1065 | IPR013591 | - | |
| Acco04g0580 | 1078 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 626 | 696 | IPR013083 | - | |
| Acco04g0580 | 1078 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 212 | 454 | - | - | |
| Acco04g0580 | 1078 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 515 | 566 | IPR000408 | - | |
| Acco04g0580 | 1078 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 294 | 345 | IPR000408 | - | |
| Acco04g0580 | 1078 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 567 | 618 | IPR000408 | - | |
| Acco04g0580 | 1078 | Gene3D | - | 458 | 625 | IPR009091 | - | |
| Acco04g0580 | 1078 | PRINTS | Chromosome condensation regulator RCC1 signature | 296 | 312 | IPR000408 | - | |
| Acco04g0580 | 1078 | PRINTS | Chromosome condensation regulator RCC1 signature | 504 | 522 | IPR000408 | - | |
| Acco04g0580 | 1078 | PRINTS | Chromosome condensation regulator RCC1 signature | 346 | 362 | IPR000408 | - | |
| Acco04g0580 | 1078 | PRINTS | Chromosome condensation regulator RCC1 signature | 403 | 417 | IPR000408 | - | |
| Acco04g0580 | 1078 | PRINTS | Chromosome condensation regulator RCC1 signature | 277 | 290 | IPR000408 | - | |
| Acco04g0580 | 1078 | PRINTS | Chromosome condensation regulator RCC1 signature | 387 | 403 | IPR000408 | - | |
| Acco04g0580 | 1078 | PRINTS | Chromosome condensation regulator RCC1 signature | 562 | 583 | IPR000408 | - | |
| Acco04g0580 | 1078 | MobiDBLite | consensus disorder prediction | 775 | 811 | - | - | |
| Acco04g0580 | 1078 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 235 | 293 | IPR000408 | - | |
| Acco04g0580 | 1078 | CDD | FYVE_like_SF | 629 | 681 | - | - | |
| Acco04g0580 | 1078 | SUPERFAMILY | FYVE/PHD zinc finger | 619 | 686 | IPR011011 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco04g0580 | Acco-ChrAcco04 | 4436421 | 4443671 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco04g0580 | 1018 | 1073 | Major Intrinsic Protein MIP | AT1G31880 | 44.643 | 9.93e-09 | 56.6 |