LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco04g0575	ATGGATCACGTTATTGGCGGAAAATTCAAGCTCGGGCGGAAGATTGGAAGTGGGTCGTTTGGCGAGCTCTATTTGGGCGTTAATGTGCAGAATGGAGAGGAAGTAGGTGTCAAGCTGGAACCTGTGAAGACCAAGCATCCTCAACTTCATTATGAATCAAAACTATATATGCTTCTCCAAGGAGGAACTGGTATACCACATTTAAAATGGTTTGGAGTTGAGGGTGATTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTTTAGAAGACTTGTTTAACTATTGCAATCGAAAATTCTCTCTAAAAACAGTTCTGATGCTGGCAGATCAGCTAATAAACAGAGTTGAATACATGCATTCCCGAGGTTTTCTTCACCGAGATATAAAGCCTGATAACTTTTTAATGGGTTTAGGCCGCAAAGCAAACCAGGTGTACGTAATTGATTATGGCCTTGCAAAGAAGTATCGGGATCTCCAAACACATAAGCACATACCATACAGGGAAAACAAGAATCTAACTGGAACTGCTCGGTATGCAAGTGTTAACACTCACCTTGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCACTTGGATATGTGCTCATGTACTTCTTGAGAGGAAGTCTACCATGGCAAGGCTTGAAAGCTGGCACCAAAAAGCAGAAATATGACAAGATCAGTGAAAAGAAGATGCTTACTCCAATAGAGGCCCTTTGCAAGTCATATCCTTCAGAGTTTACGTCTTACTTTCACTACTGCCGATCATTGCGGTTTGATGACAAACCTGATTATGCATACCTAAAGAGACTCTTCCGTGACCTATTTATTAGAGAAGGTTATCAATTTGATTATGTATTTGATTGGACTATATTAAAATATCCACTAATTGGATCAAGTTCCAGATCACGGCAGCCAAGTGGGAAGCAAGTTATAAACCAAGGACCTCCTGCAGAAAGAATGGAAAGGCCTTTAGTGGCACAAGAGCCTCGGGAAAGACTTCCAGGTTCAGTTGAAGCATTTGCTAGAAGAAGTGGCTCTGGTCTGCTTGGTGATCATTCTAGGCACAGATCTTCAGATGGGACGCCCTCGTCCAAAGTAGTGCTCCTTGATTCCGAGAGGGCTCGTAGTTCTTCACGCACTGGTAGTGCCTCGAAAAGGCCTGTCGTATCAAGCAGCCGACCAAGCTCATCTGGTGAGCCTAGTGAAAGCCGAGCTAGCAGATTAATGTCGGGCAGTGGCCGTTTATCGACCACTCAAAGGATTCAGCCTGGTTTTGAGTCCAAATCATCATCTTTTACCCGTGCTACAACATCAAGAGGTGGCCGTGATGATGCAATAAGGAGCTTTGAGCTTCTGTCAATTGGCACAGGGAAAAGGAAATGA	1389	0.4341	MDHVIGGKFKLGRKIGSGSFGELYLGVNVQNGEEVGVKLEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEALCKSYPSEFTSYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGYQFDYVFDWTILKYPLIGSSSRSRQPSGKQVINQGPPAERMERPLVAQEPRERLPGSVEAFARRSGSGLLGDHSRHRSSDGTPSSKVVLLDSERARSSSRTGSASKRPVVSSSRPSSSGEPSESRASRLMSGSGRLSTTQRIQPGFESKSSSFTRATTSRGGRDDAIRSFELLSIGTGKRK	462

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco04g0575	462	MobiDBLite	consensus disorder prediction	301	449	-	-
	Acco04g0575	462	FunFam	Putative Casein kinase I	1	85	-	-
	Acco04g0575	462	Pfam	Protein kinase domain	10	228	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco04g0575	462	CDD	STKc_CK1_delta_epsilon	8	282	-	-
	Acco04g0575	462	FunFam	Casein kinase 1-like protein	1	329	-	-
	Acco04g0575	462	Gene3D	Transferase(Phosphotransferase) domain 1	1	330	-	-
	Acco04g0575	462	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	124	136	IPR008271	GO:0004672\|GO:0006468
	Acco04g0575	462	SMART	serkin_6	9	434	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco04g0575	462	PANTHER	CASEIN KINASE-RELATED	9	372	-	-
	Acco04g0575	462	SUPERFAMILY	Protein kinase-like (PK-like)	4	290	IPR011009	-
	Acco04g0575	462	MobiDBLite	consensus disorder prediction	362	440	-	-
	Acco04g0575	462	ProSiteProfiles	Protein kinase domain profile.	9	278	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco04g0575	Acco-ChrAcco04	4387538	4391737	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco04g0575	8	213	MAP Kinase Kinase Kinase	AT3G06030	25.000	2.53e-13	70.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CK1_CK1	Acco04g0575		Pkinase	1.1e-24	CL0016