Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0535 ATGGATTCAGATCAAGGGAAGCTTTTTATTGGCGGGATATCGTGGGATACGACGGAGGACAAGCTCAAAGATCATTTCAGCAACTACGGTGATATTTTGCACGCCTCCGTTATGAGAGAGAAGAACACTGGGAAGCCCAGAGGCTTTGGATTTGTTGTGTTCGCTGATCCTTCGATTCTCGATAGGGTTCTCGAGGAGAAGCACGTAATCGATGGAAGAACGGTAGACGTGAAGAAGGCCTTCTCCAGAGAGGATCTACAAATTTCAGGCACTCCCCGTGCTGGAAATCCCAATTCTTATAGAAATTCTGGAAATGGTGGAAATATCAGGACCAAAAAGATATTTGTTGGTGGGTTGCCTCCTACGTTGACTGAAGAGAAGTTTGGTCAGTATTTTGAGGCCTATGGTCATGTTACTGATGTAGTAGTAATGTATGACCAGAGTACTGGACGGCCACGTGGATTTGGATTTATTTCATTTGACACTGAAGATGCAGTTGACAGGGTTTTGCACAAGCCATTTCACGATTTAAATGGTAAGCAAGTAGAAGTGAAGCGTGCACTTCCAAAGGATGCTAATCCGGGTAGTGGCCGTATGAGTAGTGCAGGGGGAGGTGGCAGTGGTTATCAGGGTTATGGGGCATCTGGTGGCAACCAGAATGCATATGATGGCCAGATGGATTCTGGTAGGTATGTGCAGCCTCAAAGTGCTGGGGGTGGGTTTCCACCTTATGGTTCTTCTGGATATAGTGCTCATGGACACGGTTATGGTCATGCTAACAACGGCATGGGTTATGCCGGATATGGAAGTTATGGTGGTGCAAGCACTGGGTATGGCGGACCTGCTGGTGCAACCTATGGGAATCCCGACATCTCTAATGCTGCTTTTGCTGGTGGTCTGCCTGGTGGCCCAAGGAGTTCATGGCCTTCTCAAGCTCCCTCTGGTTATGGTTCTATGGGCTATGGGAATACTGCTGCCTGGGGTGCTCTTGGTGGCGGCAGTGGCGTCGGTTCAGCACCTGCAGGTCAATCACCCAGTGTAGCTGCTGGTTATGGTAATCAAGGGTATGGTTATGGTGGGTATGTTGGAAGCAATAGTTCTTATGGGAACCCTGGTGTATATGGTGCTGTTGGCGGGCGTCCGGAAAGTGCCCCAAATAGCTATGCTAGTGGTCCTGGAGGAAATGAACCACAAGGGAGTGGTGGCAACTACAATGGAAGTGGCTATGGTGATGCAAATGAAAATTCAGAGTATGGTAATGCTGCATGGAGATCTGAACCTTCACAACCATCTGGAAATTATGGGACTCCTCTAGTAAATGGTCCTCATGGTGGGCAAGTTGGTTATGGCAGCAGCTATGGGGGTGCACAGACACGGCAGGCCCAACAGCAGTAA 1395 0.4882 MDSDQGKLFIGGISWDTTEDKLKDHFSNYGDILHASVMREKNTGKPRGFGFVVFADPSILDRVLEEKHVIDGRTVDVKKAFSREDLQISGTPRAGNPNSYRNSGNGGNIRTKKIFVGGLPPTLTEEKFGQYFEAYGHVTDVVVMYDQSTGRPRGFGFISFDTEDAVDRVLHKPFHDLNGKQVEVKRALPKDANPGSGRMSSAGGGGSGYQGYGASGGNQNAYDGQMDSGRYVQPQSAGGGFPPYGSSGYSAHGHGYGHANNGMGYAGYGSYGGASTGYGGPAGATYGNPDISNAAFAGGLPGGPRSSWPSQAPSGYGSMGYGNTAAWGALGGGSGVGSAPAGQSPSVAAGYGNQGYGYGGYVGSNSSYGNPGVYGAVGGRPESAPNSYASGPGGNEPQGSGGNYNGSGYGDANENSEYGNAAWRSEPSQPSGNYGTPLVNGPHGGQVGYGSSYGGAQTRQAQQQ 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0535 464 CDD RRM2_Hrp1p 113 190 - -
Acco04g0535 464 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Acco04g0535 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Acco04g0535 464 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 464 - -
Acco04g0535 464 SMART rrm1_1 7 78 IPR000504 GO:0003723
Acco04g0535 464 SMART rrm1_1 113 185 IPR000504 GO:0003723
Acco04g0535 464 MobiDBLite consensus disorder prediction 89 107 - -
Acco04g0535 464 MobiDBLite consensus disorder prediction 388 436 - -
Acco04g0535 464 MobiDBLite consensus disorder prediction 384 464 - -
Acco04g0535 464 FunFam heterogeneous nuclear ribonucleoprotein 1 107 225 - -
Acco04g0535 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Acco04g0535 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Acco04g0535 464 Gene3D - 108 226 IPR012677 -
Acco04g0535 464 SUPERFAMILY RNA-binding domain, RBD 111 218 IPR035979 GO:0003676
Acco04g0535 464 Gene3D - 4 86 IPR012677 -
Acco04g0535 464 MobiDBLite consensus disorder prediction 186 219 - -
Acco04g0535 464 SUPERFAMILY RNA-binding domain, RBD 3 110 IPR035979 GO:0003676
Acco04g0535 464 MobiDBLite consensus disorder prediction 88 107 - -
Acco04g0535 464 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Acco04g0535 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0535 Acco-ChrAcco04 4086008 4088227 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0535 8 188 Eukaryotic Initiation Factors Gene Family AT2G23350 21.858 2.38e-08 54.7