Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0516 ATGGCGGCTTCTGCAGCTGCGGCTATAGGCTCATCATTCTCTTCCTCCATCAACACTCTCAAGTGCCTTCGTTCATCCAAGAACTTGTCCTCTGGACTCCTCCTCAGAATTTCATCAAACCGCGTATCAGCGTCGTTGTCACCATCGCACTTGGTGGAACCACTTTCCTTTGATACCAATGTCAATAAATTGTGGGTTTCAAGGGTTTCGGCACAAGAAGAGCTTGCGGTGGTCGATGAGGTTGGTGATGGTTCAGTTGAAGAGAATGAGGAGGGAGAAAAGGAAGTGGTAGAAGAAGGAGAGACTGAAGAAGTCTCTGTCCACACTAAACTTTATTTTGGGAACTTGCCTTACAGTGTTGATAGTGCACAACTCGCGGCGATTATTCAGGATTATGGCAGCCCTGAACTCATTGAGGTTCTATACAACAGAGAGACTGGAAAAAGCAGAGGTTTTGCATTTGTTACAATGAGTAGTGTCGAAGATTGTAACGCAGTGATAGAAAACCTCGATGGAAGGGAATACTTGGGTCGAACCCTGCGAGTGAACTTGTCTGACAAACCTAAACCGAAAGAACCCTTGTACCCTGAATCTGAACATAAGCTTTTTGTTGGGAACTTGTCATGGTCTGTAACTTCTGAGAGTCTTACAGAAGCTTTTCAACAATATGGAAATGTGGTTGGAGCTAGGGTCTTATACGATGGGGAAACAGGAAGATCCCGTGGTTATGGCTTTGTTTGCTATCCAACCAGCTCAGAAATGGAAGCTGCCCTTTCATCCATGGATGGAGTGGAACTGGAAGGACGAGCAATGCGTGTAAGCTTGGCTGAAGGGAAACGATCACAAAGTCAATAG 855 0.4561 MAASAAAAIGSSFSSSINTLKCLRSSKNLSSGLLLRISSNRVSASLSPSHLVEPLSFDTNVNKLWVSRVSAQEELAVVDEVGDGSVEENEEGEKEVVEEGETEEVSVHTKLYFGNLPYSVDSAQLAAIIQDYGSPELIEVLYNRETGKSRGFAFVTMSSVEDCNAVIENLDGREYLGRTLRVNLSDKPKPKEPLYPESEHKLFVGNLSWSVTSESLTEAFQQYGNVVGARVLYDGETGRSRGYGFVCYPTSSEMEAALSSMDGVELEGRAMRVSLAEGKRSQSQ 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0516 284 SMART rrm1_1 201 274 IPR000504 GO:0003723
Acco04g0516 284 SMART rrm1_1 110 183 IPR000504 GO:0003723
Acco04g0516 284 Gene3D - 67 189 IPR012677 -
Acco04g0516 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 181 IPR000504 GO:0003723
Acco04g0516 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 271 IPR000504 GO:0003723
Acco04g0516 284 SUPERFAMILY RNA-binding domain, RBD 108 192 IPR035979 GO:0003676
Acco04g0516 284 CDD RRM2_NsCP33_like 201 276 - -
Acco04g0516 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Acco04g0516 284 SUPERFAMILY RNA-binding domain, RBD 193 281 IPR035979 GO:0003676
Acco04g0516 284 FunFam 28 kDa ribonucleoprotein, chloroplastic 191 282 - -
Acco04g0516 284 PANTHER OS02G0815200 PROTEIN 46 280 - -
Acco04g0516 284 FunFam 31 kDa ribonucleoprotein, chloroplastic 71 190 - -
Acco04g0516 284 Gene3D - 190 284 IPR012677 -
Acco04g0516 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 278 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0516 Acco-ChrAcco04 3998562 4000592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0516 109 279 Eukaryotic Initiation Factors Gene Family AT3G16380 30.000 1.16e-16 77.8