Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0511 ATGACTCTGGGTTTACTAGGTGGTGGGGGTGGCGGCAACGGTGTCTCTTCTGGGGCTACCCCAAATGAGTCTTCTGTGTCAAATGCTAAGGTTCTGGCTCAAGAATGTTCATCATCGTTCAAAGGTGAGGCTGAACTTGAACTGGGTTTGGGTCTGAGCCTTGGTGGTGGTGGTGGTGGGAAGGCCAAGCCTTCTTCTGCATGGGGTGAGTGTCGTCGTATTTTGACGGCTAAAGACTTCCCTTCTGGAGTCTCTCATGGACCTTCTGTTGCTGCTTCTCGTTTCTCAGATAGAGTCAGTACTGTGGGTGGCTCTGTTTCTGGCACTAAGAGAGCTGCTGACTCTGTCTCTCATGACGCTGGATCTCCCACTGCTGGCAGTCAAGTTGTTGGGTGGCCACCCATCAGGGCATATAGGATGAATAGCTTGATTAACCAAGCAAAGGCTCAGAGAGCTGAAGAAGATAAATCCGGCGGCGATAAGAATAATCCTGATGATGTTTCAGTTACTAAAACTGGCGCTGTCAACAAGACTGAAAAAAACCATCTTGGTTTTGTGAAGGTGAATATGGATGGAGTTCGCATTGGGAGAAAGGTAGACTTGAATTCTCATTCAAGCTATGAGAATTTAGCTCAAACTCTGGAAGACATGTTTTTCAAGCCTGCTAAATCAACTGGGTGTGAGAAAGAGCCCGGAACAAAACTCTCTAAGCTTTTGGATGAAACATCTGAATTTGTGCTGACATATGAAGATAAAGAGGGTGATTGGATGCTTGTGGGAGATGTTCCCTGGAGGATGTTCCTCAGCTCAGTGAGAAGGCTCCGAATCATGAGAACATCTGAGGCCAATGGACTTGCTCCTAGATATCAAGAGAAGAATGAGAGGCTAAGGATCAAACCCATTTAG 906 0.468 MTLGLLGGGGGGNGVSSGATPNESSVSNAKVLAQECSSSFKGEAELELGLGLSLGGGGGGKAKPSSAWGECRRILTAKDFPSGVSHGPSVAASRFSDRVSTVGGSVSGTKRAADSVSHDAGSPTAGSQVVGWPPIRAYRMNSLINQAKAQRAEEDKSGGDKNNPDDVSVTKTGAVNKTEKNHLGFVKVNMDGVRIGRKVDLNSHSSYENLAQTLEDMFFKPAKSTGCEKEPGTKLSKLLDETSEFVLTYEDKEGDWMLVGDVPWRMFLSSVRRLRIMRTSEANGLAPRYQEKNERLRIKPI 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0511 301 ProSiteProfiles PB1 domain profile. 183 281 IPR000270 GO:0005515
Acco04g0511 301 FunFam Auxin-responsive protein 178 289 - -
Acco04g0511 301 Gene3D - 177 291 - -
Acco04g0511 301 MobiDBLite consensus disorder prediction 103 128 - -
Acco04g0511 301 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 45 284 IPR003311 GO:0005634|GO:0006355
Acco04g0511 301 MobiDBLite consensus disorder prediction 146 174 - -
Acco04g0511 301 SUPERFAMILY CAD & PB1 domains 185 277 - -
Acco04g0511 301 MobiDBLite consensus disorder prediction 1 28 - -
Acco04g0511 301 Pfam AUX/IAA family 63 288 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0511 Acco-ChrAcco04 3975727 3977888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0511 186 299 B3 DNA Binding Superfamily AT1G59750 33.043 3.80e-13 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Acco04g0511 AUX_IAA 5.9e-63 CL0072