Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0496 ATGGATTCTCTTGTACCATTTCAAAACCTCAATCACGTACCCGACCCATCCGCCTGTTTGCCCGGTGGCAGCACCAACCCCGTCAATGTTGGTGCCGATGCCGCAACCCCCACCATGTTGTTGGTACCGAAATTGGAACCGAAGCTTGAGCCGTTGGACGAGCCCTGTCTGAACCATCAACCCCAAGAAACCCAAGAAGTGGAGCAGACCATGTTTTCGAATCATGCCTTGGAAGCGCTCTCTCCGTCTCAGCGCAATAATTTCTGTGATAATAGCCTCGCTTCCGGTGACACACGAGGCGCATCGACGGAACAAGACAACTTGTATGCGGAGTTTTATCGATTTTCCGAGCAGTTTAGGAACATGTTAGCTGACAGTTTAAAAGCAAAGGTAAATGTCGACGATTTAGGTCCAGATTCGCGGGCAATTGTTCCTGTGCCACAGGAAAATCAGGCTCCTCCGGTCGTCGTTACTCCGCGGCGGACTCCGCGGGTGAAGGAGCTGGTGAGGGTTAATGATCTTCGAATTGAAGATGAAAGGTATTTCCGAGACATTATTAGAAGGGCCAGGATGATTTATGATTCGTTGCGTGTCTTGGCAACGGTGGAGGATGAGAAGAAATTCGATTTTTCTAGCGCCAAAAGGATGCGAGGTGATCTGAGGGCTTCCTCGTTAATGAGGGATCGTGGATTGTGGCTTAATCGTGATAAGCGTATAGTGGGTGCGATTCCAGGGATTTACATTGGCGATTTGTTCTTTTTTAGGATGGAACTTGTCGTGGTTGGGTTGCACGGTCAACCACAAGCTGGAATTGACTATCTTCCTTCCAGCCAGAGCACAAATGGTGAGCCGATAGCAACCAGTGTAATAGTTTCTGGTGGATATGAGGACGACGAAGACAGTGGTGATGTGATAATCTACACGGGTCATGGAGGCCAAGGTAAGAATATTACAAGGCAAGTTGTTCACCAGAAGTTGGAAGGAGGAAATCGTGCTATGGAAAGAAGCATGCATTATGGGATTGAAGTGCGTGTTATTCGAGGGTTCAAATACGAGGGAAGTGTTTCTAGTAAAATCTACGTTTATGATGGCTTGTATAGAATTGTTCAATGCTGGTTTGATGTGGGTAAATCTGGATTTGGAGTTTACAAGTATAAACTTGTCAGAATTGAGGGCCAACCTCAAATGGGTAGTGCTATTCTTAAACTTGCTCAGACTCTTAGGACTAGTCCTTTGTCTATCAAGCCAATGGCTTATCTCAGTCTTGATATTTCTAACCAAAGGGAGAGGGTTCCTGTTCGTCTTTTTAATGACATAGATAAGGATCACGAGCCTCTTCGCTATGAATATCTTTCACGGACTAATTTTCCACCATTTGTATTTCATCAAAGTGGGAGTGCTACTGGTTGTGACTGCGTTGATGGCTGTGCTGATAATTGTTTTTGTGCCATGAAAAATGGCGGCCAATTCCCTTATAATCTAAACGGGATTCTTGTGAGAGGGAAGCCTATTATTTTTGAATGTGGCCCTTTCTGTCGTTGTCCTCCACATTGCCGAAATCGTGTTACACAACATGGGCTGAGAAATAGAATGGAAGTGTTTAGGTCAAGGGAAACAGGTTGGGGAGTGAGGTCATTGGACCTTATTCATGCTGGTGCTTTTATCTGTGAATATGCTGGGGTTGTTCTGACCATGGAGCAAGCAAAAATTTTGTCAATGAATGGCGATTCATTAATATATCCGAGTCGGTTTTCTAACAGGCAAGCCTCAGAATGGGGTGATGTATCTCAAATTTTCGCAGATTATGTGCATCCATCTTATCCATCTATTCCTCCTTTAGACTTTGCGATGGATGTGTCCACAATGAGGAATGTTGCTTGCTATATGAGCCACAGTTCAATTCCTAATGTGTCGGTTCAGTTTGTGCTGTACGATCACAATAATCTGATGTTCCCTCACCTTATGCTATTTGCATTGGAGAACATCCCTCCAATGAGGGAGCTCAGCCTTGATTATGGGGTGGCTGATGAATGGACAGGAAAGCTTTCTATATGTAACTGA 2061 0.4493 MDSLVPFQNLNHVPDPSACLPGGSTNPVNVGADAATPTMLLVPKLEPKLEPLDEPCLNHQPQETQEVEQTMFSNHALEALSPSQRNNFCDNSLASGDTRGASTEQDNLYAEFYRFSEQFRNMLADSLKAKVNVDDLGPDSRAIVPVPQENQAPPVVVTPRRTPRVKELVRVNDLRIEDERYFRDIIRRARMIYDSLRVLATVEDEKKFDFSSAKRMRGDLRASSLMRDRGLWLNRDKRIVGAIPGIYIGDLFFFRMELVVVGLHGQPQAGIDYLPSSQSTNGEPIATSVIVSGGYEDDEDSGDVIIYTGHGGQGKNITRQVVHQKLEGGNRAMERSMHYGIEVRVIRGFKYEGSVSSKIYVYDGLYRIVQCWFDVGKSGFGVYKYKLVRIEGQPQMGSAILKLAQTLRTSPLSIKPMAYLSLDISNQRERVPVRLFNDIDKDHEPLRYEYLSRTNFPPFVFHQSGSATGCDCVDGCADNCFCAMKNGGQFPYNLNGILVRGKPIIFECGPFCRCPPHCRNRVTQHGLRNRMEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAKILSMNGDSLIYPSRFSNRQASEWGDVSQIFADYVHPSYPSIPPLDFAMDVSTMRNVACYMSHSSIPNVSVQFVLYDHNNLMFPHLMLFALENIPPMRELSLDYGVADEWTGKLSICN 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0496 686 Gene3D - 238 397 IPR036987 -
Acco04g0496 686 SMART G9a_1 236 393 IPR003105 -
Acco04g0496 686 Pfam SET domain 540 673 IPR001214 GO:0005515
Acco04g0496 686 SUPERFAMILY PUA domain-like 222 402 IPR015947 -
Acco04g0496 686 SMART set_7 529 679 IPR001214 GO:0005515
Acco04g0496 686 Gene3D SET domain 398 686 IPR046341 -
Acco04g0496 686 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 151 674 - -
Acco04g0496 686 ProSiteProfiles Pre-SET domain profile. 468 526 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Acco04g0496 686 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 98 686 IPR025794 GO:0016571
Acco04g0496 686 ProSiteProfiles YDG domain profile. 241 389 IPR003105 -
Acco04g0496 686 SUPERFAMILY SET domain 411 685 IPR046341 -
Acco04g0496 686 ProSiteProfiles SET domain profile. 529 673 IPR001214 GO:0005515
Acco04g0496 686 Pfam SAD/SRA domain 240 393 IPR003105 -
Acco04g0496 686 SMART preset_2 421 513 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Acco04g0496 686 ProSiteProfiles PUA domain profile. 332 350 - -
Acco04g0496 686 Pfam Pre-SET motif 424 521 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0496 Acco-ChrAcco04 3851317 3853377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0496 160 675 Su(var)3-9 homologs AT5G04940 39.662 1.45e-109 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Acco04g0496 SAD_SRA 3.2e-48 CL0178