Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0444 ATGGCAGAGACGACTTGGAAATATGTCAGTGTCTGCTTGCTGGTGCTCGTAACGTTGTTCATTGGAGCCACGGCCAGAGTACAGATCTCTGAACTCAGGAATGTTGGAGCACAGAAATTGGAGAGCTTAACCAACACGTCAATGGCGGCCAGAGCCAAACAAGCTGAGGAATTGAATGAACGTGCTGCGGCTGCTAACCCAGAGGAGGTTGTTTCCCATACTGTAATGACGATCCGAAACAGCACTGAAAGAAGAAAGTTGGGATTTTTCTCCTGCGGAACCGGTAATCCCATTGATGACTGCTGGCGTTGCGACCCCAACTGGCAACGCAACAGGAAGCGCCTCGCAGACTGCGGCATTGGATTTGGTAGGAACGCCATTGGTGGTCGTGACGGTCGCTTTTATGTCGTCACTGACTCCGGAGACGATGACCCAGTCAACCCAAAGCCAGGTACTCTGCGGCACGCAGTGATCCAAGACAGGCCGCTCTGGATTGTATTCAAGCGTGACATGGTGATTCAATTGAAGCAGGAACTCCTTGTCAACAGCTTCAAGACAATTGATGGGCGAGGAGCAAATGTGCACATTGCTAATGGAGGCTGCATCACTATCCAGTATGTGACAAACGTGATAATCCACGGTCTTCACATCCATGACTGCAAACCCACAGGCAACGCCATGGTGAGAAGCTCCCCAACACACTATGGTTGGAGGACAATGGCGGACGGTGACGCCATTTCCATATTTGGATCCAGTCACTTATGGGTCGACCACAATTCCCTCTCTCACTGCGCAGATGGCCTCGTCGACGCAATCATGGGTTCTACCGCCATTACAATCTCCAACAACCACTTCACGCACCACAATGAGGTGATTCTGCTGGGGCACAGTGACTCTTACACGAGGGACAAGCAAATGCAAGTGACCATCGCTTACAACCACTTTGGAGAGGGACTCATCCAGAGGATGCCAAGGTGCCGGCACGGGTATTTCCACGTAGTGAACAATGACTACACTCACTGGGAGATGTATGCAATCGGAGGGAGTGCAAACCCCACCATCAACAGCCAGGGTAATAGATATAATGCTCCCCTCAACCCATTCGCCAAGGAGGTGACAAAGCGAGTGGAGACTGCAGAAAGCCAGTGGCATGGATGGAACTGGAGGTCGGAGGGAGATATGATGCTGAACGGTGCTTATTTCACCCCCTCCGGCGCTGGAGCTTCAGCCAACTATGCCAGAGCCTCCAGCTTAGGAGCTAAGTCCTCTTCCATGGTTGGCACCATGACTTCCAATGCAGGTGTACTTGGCTGCAAAAGAGGCAGTCAGTGCTAG 1335 0.5191 MAETTWKYVSVCLLVLVTLFIGATARVQISELRNVGAQKLESLTNTSMAARAKQAEELNERAAAANPEEVVSHTVMTIRNSTERRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLKQELLVNSFKTIDGRGANVHIANGGCITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPTHYGWRTMADGDAISIFGSSHLWVDHNSLSHCADGLVDAIMGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNPFAKEVTKRVETAESQWHGWNWRSEGDMMLNGAYFTPSGAGASANYARASSLGAKSSSMVGTMTSNAGVLGCKRGSQC 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0444 444 PANTHER PECTATE LYASE 18-RELATED 60 442 IPR045032 GO:0030570
Acco04g0444 444 Pfam Pectate lyase 176 359 IPR002022 -
Acco04g0444 444 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Acco04g0444 444 PRINTS Pollen allergen Amb family signature 242 263 IPR018082 -
Acco04g0444 444 PRINTS Pollen allergen Amb family signature 415 438 IPR018082 -
Acco04g0444 444 PRINTS Pollen allergen Amb family signature 178 194 IPR018082 -
Acco04g0444 444 PRINTS Pollen allergen Amb family signature 344 363 IPR018082 -
Acco04g0444 444 PRINTS Pollen allergen Amb family signature 142 167 IPR018082 -
Acco04g0444 444 PRINTS Pollen allergen Amb family signature 118 135 IPR018082 -
Acco04g0444 444 PRINTS Pollen allergen Amb family signature 386 410 IPR018082 -
Acco04g0444 444 FunFam Pectate lyase 95 437 - -
Acco04g0444 444 Gene3D - 95 437 IPR012334 -
Acco04g0444 444 SUPERFAMILY Pectin lyase-like 78 438 IPR011050 -
Acco04g0444 444 SMART amb_all 170 367 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0444 Acco-ChrAcco04 3383619 3387748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0444 28 444 Polysaccharide Lyase AT4G13710 76.303 0.0 701