Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0436 ATGCGGGTGAGTAAACCGACCCGACATCTGGCCAACGGAACGTTGCAAGCGATGGTGTTCCGCAATGCCCACACATCCACTGGCGAATCGATTTCAGCGCAAGGGTTCATCATTATCATCATCGTCTTTCCGGATACGTTCTGGGTATTTGAGTTTATAATCGACCCAAGTACCGGGTTTCGTTGTATTTATTTGTCTTTTGATGAACTGGAACTGCCTCCTTTTGCCCACCCTCTCGTTTAAGAAAATATGGAGGATATGGAGATTGATCAAATTGTGGATGTTCCTGACACTCCTGATAGATTAACTACTAGACATGTTGGTCGAAAATATGCTGGTACCCCTGATGTTTGTGTGAAAGATAAGGGAGAGAGGGTTTCCCCTGTTGCTGAAAGCAGTAAGAATGGAAGGCTGGCTTTTTGTCTTCCAAAGAGTTCAAACAGTGGTGAAATGAATAACTGCATAGCTGCATCCTCGTCAAATAATTCTTATGCTTCCCAAAAGGGTCCCATATTTAGGAGGTCCCAAACTGAAAAATCTTTTAGTAATGAGTTCGCACACATGGCTGGATCTGAAAGGATGGAGGAAGGGAAAAATATATGTCTTAAATTTCCTTCTAAATCATCTTCCAGTGGCAATGGGGGTGTTACTGTTTTTGATTTGACTGAAGAAAATGGACCCCAAAAACTCAAACCATTTTTCTCACATCATGGATCGAAGGATAATGCAACTGAAACCAAGAAACATGGGAAAGCAAGTGTTGGGAACTCTCCTAAATCTTGCATTCCTGATTCTTCAAATACATCTAGCAATGCCTTACGAGGAAAGGGTAAAATAGATGATAAACAACATCTATGCTCGAATATAACTGTTGATCGGGGAAAGAGTATTGATCTATCTAGTGTTTCTCAACAAAAAACTGAAAAGCAGGTGTCTTTGTCTCCTCACCTTATAACTGCCCCAGGATTCAGAGGCCAGAAGAGATTGGTGCGAAATGGATGTATCTCTCCTTATAATATTGCAGCTAGAGCAAAACAATCAGCTGAACAGAATGATGTTGAACAGAGACATGGGGGGGAAGATGTTTCTAGCAACACAACGCCTCATATGAGTATCAATGATATAGTTGCTGAAGAGAGAAGCAGTATGAAGGGAAAAGAATTGTTTATCCATCCTTCAAGTGGGCATGATGCCAGAACTATCAAAACAGCTAACAGCTGCCCTATAGATAATTATGAAGAGACCAGGGGCATCAGTAATGCTATCAGAAATTCACATGAAAGCTTTGGGGGATCAGATGGTTTGACAATATCACATAACAGCACAACTACTCATTGGCCCCTGCATGATGTAACTGGGCATCTTTCAAGGAGAGGTGAAGATTCTGAAAGATTTGTGAGCACAAAATGTAGAAACAGAGTGGGTAGAAGAGACACTAGGAGCTGTCAAAACACTATGGATGTAAGATATCCTCTAGAAACTCGCGCAACTTCTCTGATCATTCCTGACGCTGAAGAGTCAACTAGACCTTCTAATACAGCAGACAAACTGACTAAAAGGCAAAGGAAACATGCGCCAACTTCTGGAAATCTTATTCCAGAGATTATGATTCTTGACTCACCTGGGGAATCATCAAATTTAAGCTCATCTAGAAGATCTGAAGTTATTGAGCCATTATCTGGAACAACATACACCAACAGAGCATCCCATGATTCCGATGACATGAATCCTAATGACTCAGATACTAGGGCTAGACAGGTAGAAGCAGATGAGATATTGGCCCGTGAACTTCAAGAACAACTATATCATGAGGATTCTTTTGATGGGGGAGAGCTTATTGATGAACATTTAGCGTGGGCATTGCATCATGAGGAGGAACTTCTGCATACATCTCATGATGCTCACCATATATCACATGCTAGATGGTTGTCAAGGGCAGCCTCAAATAGACAGCCTCGTTCCCGGTATCATCAAAGTCTTGCAAATAGAAGGAGGGCTGTGCCTCATGTCCCTCTCTCTAATAGAGTGTCACAGTTCAGGAATCGCTTTGTAAATCGGTCTTCAACATCTGCCTTCCCAACCAGAGGAAGGCGTCTTCAGTTTCCTGTGGATATGGACTTTGACATGAGACTTGATATATTGGAAGCATTGGAGGATGCAGTTGGGGATATTGGTGACATGGAAATGGCTGAGAACATGTTTCAAGCTCGTCGAGACTTCAATGAAAACGATTATGAAATGTTATTGGCCCTTGATGAGAACAATGACCAACATGCTGGTGCGTCTGCCCGTCAGATCAATAGTTTGCCGCAGTCCACTATACAGACTGACACCTGCCAAGAGGCCTGCGCCGTGTGTCTTGAGATTCCTGTTACTGGAGAAACCATTCGACATCTTCCTTGTTTGCACAAATTTCACAAAGATTGTATCGATCCTTGGCTTCGTAGAAGGACCTCGTGCCCAGTGTGCAAGTCATCTATCACCTAA 2487 0.4258 MRVSKPTRHLANGTLQAMVFRNAHTSTGESISAQGFIIIIIVFPDTFWVFEFIIDPSTGFRCIYLSFDELELPPFAHPLVXENMEDMEIDQIVDVPDTPDRLTTRHVGRKYAGTPDVCVKDKGERVSPVAESSKNGRLAFCLPKSSNSGEMNNCIAASSSNNSYASQKGPIFRRSQTEKSFSNEFAHMAGSERMEEGKNICLKFPSKSSSSGNGGVTVFDLTEENGPQKLKPFFSHHGSKDNATETKKHGKASVGNSPKSCIPDSSNTSSNALRGKGKIDDKQHLCSNITVDRGKSIDLSSVSQQKTEKQVSLSPHLITAPGFRGQKRLVRNGCISPYNIAARAKQSAEQNDVEQRHGGEDVSSNTTPHMSINDIVAEERSSMKGKELFIHPSSGHDARTIKTANSCPIDNYEETRGISNAIRNSHESFGGSDGLTISHNSTTTHWPLHDVTGHLSRRGEDSERFVSTKCRNRVGRRDTRSCQNTMDVRYPLETRATSLIIPDAEESTRPSNTADKLTKRQRKHAPTSGNLIPEIMILDSPGESSNLSSSRRSEVIEPLSGTTYTNRASHDSDDMNPNDSDTRARQVEADEILARELQEQLYHEDSFDGGELIDEHLAWALHHEEELLHTSHDAHHISHARWLSRAASNRQPRSRYHQSLANRRRAVPHVPLSNRVSQFRNRFVNRSSTSAFPTRGRRLQFPVDMDFDMRLDILEALEDAVGDIGDMEMAENMFQARRDFNENDYEMLLALDENNDQHAGASARQINSLPQSTIQTDTCQEACAVCLEIPVTGETIRHLPCLHKFHKDCIDPWLRRRTSCPVCKSSIT 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0436 828 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 749 828 IPR013083 -
Acco04g0436 828 MobiDBLite consensus disorder prediction 226 279 - -
Acco04g0436 828 MobiDBLite consensus disorder prediction 234 248 - -
Acco04g0436 828 SMART ring_2 783 823 IPR001841 -
Acco04g0436 828 MobiDBLite consensus disorder prediction 502 581 - -
Acco04g0436 828 FunFam RING/U-box superfamily protein 748 828 - -
Acco04g0436 828 ProSiteProfiles Zinc finger RING-type profile. 783 824 IPR001841 -
Acco04g0436 828 Pfam Ring finger domain 782 824 IPR001841 -
Acco04g0436 828 MobiDBLite consensus disorder prediction 541 571 - -
Acco04g0436 828 MobiDBLite consensus disorder prediction 346 368 - -
Acco04g0436 828 CDD RING-H2_PA-TM-RING 783 824 - -
Acco04g0436 828 PANTHER SI:CH211-59O9.10 493 828 - -
Acco04g0436 828 MobiDBLite consensus disorder prediction 249 274 - -
Acco04g0436 828 SUPERFAMILY RING/U-box 782 827 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0436 Acco-ChrAcco04 3304725 3311041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0436 580 828 C3H Transcription Factor Family AT1G04790 50.794 1.86e-66 231