Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0348 ATGCGAATACAAGCTCATGCAGCTATTGAGGCCCAATTTTCCCCGCGGATCCAGTTTTTGAGCCCGCGCAAGTTAGCAGGTACTCTCTTCATCACTGAACATCGATGTCCTGGGAACGGAGGGGTGCGCAGTGCTTCCCTTCCTACAAACCTTCTTTTATTCATTCTGTTAGTCCTGGAATTCCCGAAATACCCCTCTGATCTGCCATCTATTCAAATCCCAACTTCCGTTTTGGATCAGCCTTGTCTCTCTGTGAATCCATTTCCAGCCCACACCCTCGCTGCGGGAGACCCCTCGCCTTTCCTTTCTATGGAGCTTCATAAGCGCCAGGATCAGAGCCTCCCTGAGAGGAAAGGCCAGAAGCGGAAGCTGGAGGAAGATTTCGAAGACGAGCGGGAGATCTCGGCGCCTCCTACCGGCGACGCCCGAGATGCCCTTCTCGCCGAGGTCACAGCGCAGGTTGAAATCCTCGAATCTAATTTTTCATGGCGTGAAGCCGATCGCGCCGTGGCTAAGCGTGCCGCTCACGTTCTCGCCGAGCTTGCTAAGAACGAGGAAGTAGTCAACATTATTGTTGAAGGAGGCGCTATTCCATCCTTGGTTAAGCATCTTCAAGCGCCGCCTTCGATTGAAGGCGATAGTGGTCCAAAGCCATTCGAGCACGAGGTCGAGAAAGGGAGTGCTTTCGCTTTAGGACTTCTTGCCGTTAAGCCAGAACATCAACAGCTAATTGTTGACAATGGTGCTTTAAAACATCTTGTTGGTCTGTTAAAGAGACATAAGAATTGCTCTACTTCTCGTGCTGTGAATAGTGTCATTCGCAGGGCTGCAGATGCAATCACTAATCTTGCTCATGAGAACAGCAGCATTAAAACACGTGTCAGGATGGAAGGTGGAATTCCACCACTTGTTGAATTGCTTGAATTTACTGACACAAAGGTGCAAAGAGCAGCTGCTGGTGCACTGCGAACTCTGGCATTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTTCCAACTCTAATTTTAATGCTCCGTTCGGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTAATAGGAAATCTAGTACACTCTTCACCTAATATAAAGAAAGAAGTTCTTCTTGCTGGGGCTTTACAACCTGTTATCGGATTACTTGGCTCCCCCTGCTCTGAGAGCCAAAGGGAAGCTGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGATTGTAAGGTTCATATTGTTCAGAGAGGTGCTGTCCGACCTCTGATAGAGATGCTCCAGTCCCCTGATCTACAGCTTAGAGAAATGTCTGCCTTCGCTTTGGGGAGACTCGCACAGGACACTCATAACCAAGCTGGTATAGCACACAATGGTGGCTTAGCGCCATTACTGAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAGCATAATGCTGCTTTTGCTCTTTATGGCCTCGCAGATAATGAGGATAACGTGTCTGATTTCATTAAGGTAGGTGGTGTTCAGAGACTTCAGGATGGAGAGTTTATTGTTCAAGCAACAAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAGGAGAAGATTCATGGCCGTGTCCTGAACCATTTACTATATCTCATGCGAGTTTCAGAGAAACCAGTCCAAAGACGAGTTGCTTTGGCTCTTGCTCATCTTTGTTCTGCAGATGATCAGAGAATCATATTCATTGATAACAATGGTTTGGAATTTCTCATTGGGCTCCTTGGCTCTACTAGTCCTAAACAGCAACTTGATGGTGCTGTTGCTTTATGCAAGTTGGCCAACAAAGCAACGACTCTATCACCAATAGATGCTGCTCCTCCTTCTCCAACGCCCCAGGTTTATTTGGGAGAACAGTATGTGAACAATGCTACATTGTCTGACGTAACATTTTTGGTTGAAGGGAAACGATTTTATGCTCACAGAATATGCCTACTTGCATCTTCAGATGCATTTCGTGCCATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGAGACATAGAGATTCCAAATATTAGATGGGAAGTTTTTGAGTTGATGATGAGATTCATATATACTGGATCAGTTGATGTTACTCTTGATATTGCCCAAGATCTCCTCAGTGCAGCTGATCAATATCTCTTAGAAGGACTTAAGAGACTTTGTGAGTACACGATAGCACAGGATATATCACTGGAGAATGTTTCTAGTATGTATGAACTCTCAGAAGCCTTCAATGCAATCTCATTGAGGCACACATGCATCCTCTTTATCATGGAGCACTTTGATAAATTGAGTGCGAGGCCAGGGCACTCCTGTATGGTTCAGCGTATAATACCAGAGATCCGCAACTACTTTGCCAAAGCTCTCACAAAAGCTAACTCCCGTGACATCCGGCTGTAG 2427 0.4541 MRIQAHAAIEAQFSPRIQFLSPRKLAGTLFITEHRCPGNGGVRSASLPTNLLLFILLVLEFPKYPSDLPSIQIPTSVLDQPCLSVNPFPAHTLAAGDPSPFLSMELHKRQDQSLPERKGQKRKLEEDFEDEREISAPPTGDARDALLAEVTAQVEILESNFSWREADRAVAKRAAHVLAELAKNEEVVNIIVEGGAIPSLVKHLQAPPSIEGDSGPKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALKHLVGLLKRHKNCSTSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLGSPCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDLQLREMSAFALGRLAQDTHNQAGIAHNGGLAPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIKVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKPVQRRVALALAHLCSADDQRIIFIDNNGLEFLIGLLGSTSPKQQLDGAVALCKLANKATTLSPIDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLSAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHTCILFIMEHFDKLSARPGHSCMVQRIIPEIRNYFAKALTKANSRDIRL 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0348 808 CDD BTB_POZ_ARIA_plant 628 743 - -
Acco04g0348 808 SUPERFAMILY ARM repeat 539 715 IPR016024 -
Acco04g0348 808 SMART arm_5 371 411 IPR000225 GO:0005515
Acco04g0348 808 SMART arm_5 237 285 IPR000225 GO:0005515
Acco04g0348 808 SMART arm_5 184 236 IPR000225 GO:0005515
Acco04g0348 808 SMART arm_5 454 494 IPR000225 GO:0005515
Acco04g0348 808 SMART arm_5 329 369 IPR000225 GO:0005515
Acco04g0348 808 SMART arm_5 413 453 IPR000225 GO:0005515
Acco04g0348 808 SMART arm_5 287 327 IPR000225 GO:0005515
Acco04g0348 808 SMART arm_5 569 609 IPR000225 GO:0005515
Acco04g0348 808 SUPERFAMILY POZ domain 633 735 IPR011333 -
Acco04g0348 808 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 507 IPR000225 GO:0005515
Acco04g0348 808 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 424 466 IPR000225 GO:0005515
Acco04g0348 808 ProSiteProfiles BTB domain profile. 641 708 IPR000210 GO:0005515
Acco04g0348 808 Gene3D Potassium Channel Kv1.1; Chain A 622 770 IPR011333 -
Acco04g0348 808 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 298 333 IPR000225 GO:0005515
Acco04g0348 808 Pfam Armadillo/beta-catenin-like repeat 413 452 IPR000225 GO:0005515
Acco04g0348 808 Pfam Armadillo/beta-catenin-like repeat 294 326 IPR000225 GO:0005515
Acco04g0348 808 Pfam Armadillo/beta-catenin-like repeat 329 368 IPR000225 GO:0005515
Acco04g0348 808 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 104 802 IPR044282 -
Acco04g0348 808 SMART BTB_4 641 738 IPR000210 GO:0005515
Acco04g0348 808 SUPERFAMILY ARM repeat 156 512 IPR016024 -
Acco04g0348 808 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 340 382 IPR000225 GO:0005515
Acco04g0348 808 Gene3D - 521 617 IPR011989 -
Acco04g0348 808 Gene3D - 146 520 IPR011989 -
Acco04g0348 808 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 195 249 IPR000225 GO:0005515
Acco04g0348 808 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 248 298 IPR000225 GO:0005515
Acco04g0348 808 FunFam Armadillo/beta-catenin repeat family protein 632 776 - -
Acco04g0348 808 MobiDBLite consensus disorder prediction 109 138 - -
Acco04g0348 808 MobiDBLite consensus disorder prediction 108 139 - -
Acco04g0348 808 Pfam BTB/POZ domain 634 736 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0348 Acco-ChrAcco04 2712202 2719581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0348 287 493 U-box Gene Family AT5G67340 28.846 6.82e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Acco04g0348 BTB 6.4e-26 CL0033